BAC Information

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BAC

Clone NameMSMg01-138H17
ChromosomeY (Build37)
Map Location 2,487,523 - 2,488,193
singlet/doubletsinglet
Overlap geneLOC667217
Upstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356
Downstream geneLOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138H17.T7 (MSMg01no138_h17.b1)MSMg01-138H17.TJ (MSMg01no138_h17.g1)
ACCAG344136AG344137
length703706
length of high quality
(start - end)		578 (51 - 628)610 (82 - 691)
definitionCHROMAT_FILE: MSMg01no138_h17.b1 PHD_FILE: MSMg01no138_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:32 2005CHROMAT_FILE: MSMg01no138_h17.g1 PHD_FILE: MSMg01no138_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:32 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCCCCTNAATCTATAATTGCGGCGCTAAACGACTCCTATATTCAGAGATC
CGCGGAATTCACTCCTAGTCACTCCCATTCTCGGGGTGAAATAGTCAAGT
GATGGGCAAGCAATGAATCAGGAGCTGTCATGCCATATCAGGTGCTGAAA
TGTCACGCTGCAGGTTATAAAAGCAGCGCCATTTTCCCGGTTCGGGATCT
TCCTGATAAGCAAGCAATAAAGCTCTTGCTGTGGAAGATTCTAGTTTGTT
GTATTTTTCTTGCCGGTCGAGCGGGACGCAATAGTGAATAGCTTTTACCT
CCCTGCTGTTGCTCTCCTAGTACTGACCAGAAACTGAGGTGCCATTTCCA
GCAGACTGTGCTAGGACATAGTCATAGAACACATCTTCCTTCAAAAGCAG
CTTCTAGGCTTCATTGGAAAAAACTTAAATCTGTGAATATTGGGAACAGA
GTCTGTACATAGCTCAGTTGACAGAGTGACTGCCTAGCATTTAGCATGCC
TAGGACTCAGTGATTAGTGCTGTCTTTACTTTATTGCCTTTAGTGTGTCT
ACTTATTATATTGTAATACACTTGGGATCATAGAAAGGGATATCATGATG
ACCTAAGACCAAGACTGTCAATGATGTTGGTTAGAGTCTTCTCTTGTATC
CTCAGGCTAAAGAGACCTGATACCAGAGTGACTCACATTACTGAGAAACT
CAA

TTCTTNNTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGTCCATATTAATGGAG
ACATCTAGTCCTCCTACAGGTTGATCTCCTCCTCAGTCTCCTTCAGTTTT
TCTCCAATTAAACCAATGGTTCAACATATTCTGTCCGTTGGTTGGTTGCA
TACAACTTCATCTGATTGTTTCACTAACTTGTTTGTTCTTAAGAAGTACA
GTCATGGTAGTATTAATATTACAAATGTGTGAATTCAGAAAACTGCAGAG
GTTGCTTACTGCAAGAAGGTATTCTGCAAAAGCAATAGATGATAAAAGTA
CTGAAATATCTATCAGTGCTCTACAATATTATATTCTAGGTGATGAAATT
TCTCTTTCTCTCTGTCTCTGTGTCTCTGTGTCTCTGTCTCTATCTCTATG
TCTGTCTGTCTGTTTGTCTCTCTCTCTCAATTTCTACTTCTCTAATACTT
ATTATGAATTATGATTCTTTTATCTTATTCCCTCCAATGGGAATGATATT
GGAATGGCATCTGTAACATTCATTCACATTCCTACACAATTTGTGCTTTC
TATTAACAATCAACTAATATCAAAGTCACACATTCACTCAGATTACAAAA
TAAGATATCTGAGCTCATGTAAAGTGATATTCTGAATCAGAGTAGGGGGA
GGGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_h17.g1 MSMg01no138_h17.g1 CHROMAT_FILE:
MSMg01no138_h17.g1 PHD_FILE: MSMg01no138_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:32 2005
         (610 letters)



>mm_chrY_2487385_2488393
          Length = 1009

 Score =  261 bits (135), Expect = 1e-73
 Identities = 525/681 (77%), Gaps = 81/681 (11%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggtccatattaatggagacatct-agtcctcctaca-ggttga-tctcctcctcagtc 57
           ||||| ||||||||| |||||| || | |||||| ||| |||| | |||||||||||| |
Sbjct: 139 tgggttcatattaattgagacacctga-tcctcccacagggtt-actctcctcctcagcc 196

                                                                       
Query: 58  tccttcagtttttctccaattaaaccaatggttca-acatattctgtccgttggttggtt 116
           ||||||||| | ||||||||||||||||||||| | | | |||||||||  |||||||||
Sbjct: 197 tccttcagtctctctccaattaaaccaatggttgaga-agattctgtccactggttggtt 255

                                                                       
Query: 117 gcatacaacttcatctgattgtttcactaacttgtttgttcttaagaagtacagtcatgg 176
           ||||||| || || ||||||||||||| | ||  || |||||| ||||||||||| ||| 
Sbjct: 256 gcatacatctgcacctgattgtttcaccagctcattagttcttcagaagtacagtaatgt 315

                                                                       
Query: 177 t-agtattaatattacaaatgtgtgaattcagaaaactgcagaggttgcttactgcaaga 235
           | | |||| ||||||||| | |||||||||||||  ||||||||| ||| |||| |||| 
Sbjct: 316 tca-tattcatattacaagtatgtgaattcagaagcctgcagaggctgcatactacaagc 374

                                                                       
Query: 236 aggtat-tctgcaaaagcaatagatgataaaagtactgaaatatctatcagtgctctaca 294
           | || | | ||||||||||||||||| || |||||| ||||| |||||| ||||||| ||
Sbjct: 375 atgtctgt-tgcaaaagcaatagatggtataagtacagaaatttctatctgtgctctgca 433

                                                                       
Query: 295 atattatattctaggtgatgaaatt-tctct-----t---tct--ctct--gtct--ctg 339
            |||| ||||||||||||||||||| |||||     |   |||  ||||   |||  || 
Sbjct: 434 gtattctattctaggtgatgaaattctctctccctctccctctccctctccctctccctc 493

                                                                       
Query: 340 t--gtct--ctgt--gtct--ctgt--ctct--atct--ctat--gtct--gtct--gtc 379
           |   |||  || |   |||  || |  ||||   |||  || |   |||   |||   ||
Sbjct: 494 tccctctccctctccctctccctctccctctccctctccctctccctctccctctccctc 553

                                                                       
Query: 380 t--gt-t---tgt--ctctctctctcaat-t---tct-act-tctctaat-act------ 418
           |   | |   | |  ||||| |||||  | |   |||  || |||||||| |||      
Sbjct: 554 tccctctccctctccctctccctctccctctccctctccctctctctaatgactcctcta 613

                                                                       
Query: 419 -----tattatgaattatgattcttttatcttattccctc---caatgggaatgatattg 470
                || ||||||| |||||||| | |||   ||| |||   ||| ||| |||||||||
Sbjct: 614 acacatagtatgaatgatgattctctaatc---ttctctcttacaa-ggggatgatattg 669

                                                                       
Query: 471 gaatggcatctgtaacattcattcacattcctacacaatttgt-gctttctattaacaat 529
           ||||| |||||| ||||||||||||| |||||||||| ||| |  |||||| ||| ||||
Sbjct: 670 gaatgccatctgcaacattcattcactttcctacacagttt-tcactttctcttaccaat 728

                                                                       
Query: 530 caactaatatcaaagtcacacattcactcagattacaaaataagatatctgagctcatgt 589
           |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 729 caactaatatcaaagtcacacattcactcagattacaaaataaggtatccgagctcatgt 788

                                
Query: 590 aaagtgatattctgaatcaga 610
           ||| || ||||||||||||||
Sbjct: 789 aaactgctattctgaatcaga 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1009
Length adjustment: 10
Effective length of query: 600
Effective length of database: 999
Effective search space:   599400
Effective search space used:   599400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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