BAC Information

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BAC

Clone NameMSMg01-145F23
ChromosomeY (Build37)
Map Location 1,271,950 - 1,272,449
singlet/doubletsinglet
Overlap genenone
Upstream geneJarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145F23.T7 (MSMg01no145_f23.b1)MSMg01-145F23.TJ (MSMg01no145_f23.g1)
ACCAG349193AG349194
length695691
length of high quality
(start - end)		636 (51 - 686)575 (77 - 651)
definitionCHROMAT_FILE: MSMg01no145_f23.b1 PHD_FILE: MSMg01no145_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:26 2005CHROMAT_FILE: MSMg01no145_f23.g1 PHD_FILE: MSMg01no145_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:26 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NAATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATC
CGCGGAATTCACTTTCCAATTCCCTTGATAACTCCTCCCAGACTAAAACC
AGACCCATTCCCACCTTAATCCTCCTCCCAAGTTCAAGTCTACTTTTCTC
CCCTTTGATACAACCCAATTCATATCAATTGTGTTGCCCCTAAACTCTTG
GACATGCGGAAACCAGTAGAGCATGGCAAACCTATCACATACAAAAGCCT
TACCTTTGATGAAAACTGATTCTCCATCCTTCATCAATAGTCCATATATT
CGCAGATGGGGATGATGGATAGTGATACCATACCACTTAGGGATGAAAGG
CAGACTGGCCTGATTTTGTGCAGATAGAGACATACAGTGTCTCAGTGACC
TCTCTGCCTTACAAGATTTCTACCATCTCTTCCGTGAGAGTTCCTAAGAC
AAAGCTCCTCTACTGCTTGCCTCTTTCTGTGAGTATGTGTGTATGTACAA
ATATGTCTATATTATACATGTCTCATTTTACATGCAAGTCAACACATAGT
GTTGTTTGCAATCAACTACTGGCACTATTTAACACTAGGCAATATGCCTT
GAGGCAGACATGGTGGACTCCGTAACAGACAGAACGTAGAGATGGCTAGA
AATCATCCCAATTAGTTGTAGTATAGGTGCAATTTACACTTTTGA

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAAACTGCAGAGGTTGCTTACT
GCAAGAAGGTATTCTGCAAAAGCAATAGATGATAAAAGTACTGAAATATC
TATCAGTGCTCTACAATATTATATTCTAGGTGATGAAATTTCTCTTTCTC
TCTGTCTCTGTGTCTCTGTGTCTCTGTGTCTCTGTCTCTATCTCTATGTC
TGTCTGTCTGTTTGTCTCTCTCTCTCTCTCTCTCTCTCAATTTCTATTTC
TCTAATACTTATTATGAATTATGATTCTTTTATCTTATTCCCTCCAATGG
GAATGATATTGGAATGGCATCTGTAACATTCATTCACATTCCTACACAAT
TTGTGCTTTCTATTAACAATCAACTAATATCAAAGTCACACATTCACTCA
GATTACAAAATAAGATATCTGAGCTGATGTAAAGTGATATTCTGAATCAG
AGTAGGGGAAGGGCACTTCCAATGTGTAGTTTCACTCAAGAGCATGGCTT
TTAAGAACTGGTCAATTGGAAGAAGATGAGACAATGTATAGAAGAGGGTG
TTTCTTTTGGTTTAGTTTGGTTTAGCTTTGTTTCTTTAGGTTACCCACAG
TCATTTTAAGAAACATTGAGAAACACTGTTTATTACCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_f23.g1 MSMg01no145_f23.g1 CHROMAT_FILE:
MSMg01no145_f23.g1 PHD_FILE: MSMg01no145_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:26 2005
         (575 letters)



>mm_chrY_1271704_1272676
          Length = 973

 Score =  323 bits (167), Expect = 2e-92
 Identities = 438/561 (78%), Gaps = 74/561 (13%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaactgcagaggttgcttactgcaagaaggtattctgcaaaagcaata---gatgat 57
           ||||| ||||||||| ||| ||||||||  |||| ||||||||||||||||   ||| ||
Sbjct: 247 agaaacctgcagaggctgcctactgcaatcaggtcttctgcaaaagcaatacacgat-at 305

                                                                       
Query: 58  aaa-agtactgaaatatctatcagtgctctacaatattatattctaggtgatgaaatttc 116
           ||| |  |||||| | ||| |||||||||||||     |||||||| |||||||||  ||
Sbjct: 306 aaata--actgaattttctgtcagtgctctaca-----atattctatgtgatgaaa--tc 356

                                                                       
Query: 117 tctttctctctgtctctgtgtctctgtgtctctgtgtctctgtctctatctctatgtctg 176
           ||  ||||||  ||      ||||    ||||    ||||  ||||  ||||        
Sbjct: 357 tc--tctctcaatc------tctc----tctc----tctc--tctc--tctc-------- 388

                                                                       
Query: 177 tctgtctgtttgtctctctctctctctctctctctcaatttcta-tttctctaatactta 235
                       ||||||||||||||||||||||||||| |||| | | ||||| |||||
Sbjct: 389 ------------tctctctctctctctctctctctcaatatctactct-tctaacactta 435

                                                                       
Query: 236 ttatgaattatgattcttttatcttattccct-cca-at-gggaatgatattggaatggc 292
            ||||||| |||||||| |||||   ||| || | | || ||| |||||||||||||| |
Sbjct: 436 gtatgaataatgattctcttatc---ttctctgctacatagggcatgatattggaatgtc 492

                                                                       
Query: 293 atctgtaacattcattcacattcctacacaatttgtgctttctattaacaatcaactaat 352
           ||||| ||||||||||||| ||||||| || |||||||||||| |||  |||||||||||
Sbjct: 493 atctgcaacattcattcactttcctactcagtttgtgctttctcttaggaatcaactaat 552

                                                                       
Query: 353 atcaaagtcacacattcactcagattacaaaataagatatctgagctgatgtaaagtgat 412
           |||||||||||||||||||||||||||||||||||| ||||| |||| || |||  || |
Sbjct: 553 atcaaagtcacacattcactcagattacaaaataaggtatcttagctcatataac-tgtt 611

                                                                       
Query: 413 attctgaatcagagtaggggaaggg-cacttccaatgtgtagtttcactcaagagcatgg 471
           ||||||| | ||||| || ||| || |||||||||||||||||| ||| |||||| ||||
Sbjct: 612 attctgagtgagagt-ggagaaaggacacttccaatgtgtagttacacccaagagtatgg 670

                                                                       
Query: 472 cttttaagaactggtcaattgga----agaagatgagacaatgtatagaagagggtgttt 527
           | ||||| ||||||| ||    |    |||||||||||| |||||||||||||| | |||
Sbjct: 671 cctttaaaaactggtaaa----acagtagaagatgagaccatgtatagaagaggttattt 726

                                
Query: 528 cttttggtttagtttggttta 548
           |||| ||||| ||||||||||
Sbjct: 727 cttt-ggtttggtttggttta 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 973
Length adjustment: 10
Effective length of query: 565
Effective length of database: 963
Effective search space:   544095
Effective search space used:   544095
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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