BAC Information

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BAC

Clone NameMSMg01-147N21
ChromosomeY (Build37)
Map Location 1,316,265 - 1,316,941
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147N21.T7 (MSMg01no147_n21.b1)MSMg01-147N21.TJ (MSMg01no147_n21.g1)
ACCAG351034AG351035
length727738
length of high quality
(start - end)		688 (40 - 727)664 (75 - 738)
definitionCHROMAT_FILE: MSMg01no147_n21.b1 PHD_FILE: MSMg01no147_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:35 2005CHROMAT_FILE: MSMg01no147_n21.g1 PHD_FILE: MSMg01no147_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTTATCCCTCACTGTCCTCTACTCCTTTTTGTGTCCTTTATTGTATTTAA
AGGTAACCATCAATTTAATCTTTCTTAACTTCTTCCTGGTCTCTTTTCTG
CATGGTAATATTGGATTTCTTAAAAAGATATCTTAATGAGAATAGAGAGA
TGACCATGTTGTCAAGAGCATTTTTGTATCGCAAAAAAACAGGATTTGTT
TTCTTGAATTCATATCCAATGGTTAACAATCAGCTTTAATGCCAGCTCCA
TGGGATCTGACAACTCATGTCTCTGTGGTCACCTATACTCTCAAGCTCAT
GCCCTATTCCCACCCATATAAATAAAGATAATAAATCTTAAATGAGAGAC
AAGTTTCATTTGGTTTCATTATTCAAATGAAACCTTATTTTGTCTGATTT
CTGAGTCTCTTTGGATCAGTTTTCTGGGTTGCACTTTGTGTAACAAGTCC
ACATTCCTTTTTCCTATCACTCTTTCCCCAACTTGTTGTTTCTCCCTCAG
ACTTCATACCAGAGATTCTATCTATGTCCTGTCTTTCTCCCCTTCTTCCT
AAAAATCCATCTTTTGCTGCCATCCCTGCTCCTCTAAGTCATATCTCCAA
TTCCTTGCTCACTATGCAGACCACAGAAGCTAAGTCCTGTCCATTTTAGC
CTGTGTGATATTAGATGTATGCACTGC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACAAAAATAACATGTGTTGCTCAAC
TCTCTGTAGGTATTAGTCAATTCTGGAATGTGGTTTACATGCACAGCAAT
ATTCCATCAGAAAAAAAAAATGTTCTTTCATATGCTTGAGGGTCTCAATT
TAGAACAGAGTCTATGTCCATTTCCCCATCTAAGTGTTGGGTTCTCACCT
ATCTTGAACTTGTACAGGTTTCATTTGTGCTACCACAGTCTTTTGAATTC
TTATGTTTAACAACATTTTGTCTGGAAGAGAATGAAGAGGAAACCATATT
TTTATGAAACTTAATAAATAAGTTTTCTCCACTTAAGAATAAGAACAAAT
TTGTTGTTAGAGTTATTACATCTCTCTTTTCTAAGAGACCATCTCATTAC
AGATAGTGTTCATTCCAACTATGAAATAACTAATATCATAATGTAAACAT
TTAGTTATCTTCCAATATTGGTAAATATTTACAATTCAACTGATTTGGTA
AATCAATTCAAAACTGACATTACCAATTTGAAAATTAAATAACTGGTTAT
TAAAATTACTAAAGTATAAAAATAAGTATGATTGCTATCAGAAAATATTG
CCTTAATAAAATTAAGCATAAGTGAAGTAACAATTTTACTTAATATAAAT
TGTATCTCATATTCATCAATACTATTTTAAGATATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_n21.b1 MSMg01no147_n21.b1 CHROMAT_FILE:
MSMg01no147_n21.b1 PHD_FILE: MSMg01no147_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:35 2005
         (688 letters)



>mm_chrY_1316062_1317142
          Length = 1081

 Score =  584 bits (302), Expect = e-171
 Identities = 594/698 (85%), Gaps = 35/698 (5%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatttatccctcactgtcctctactcctttttgtgtcctttattgtatttaaag 63
           ||||||||||| |||| || |||||||||||||||| ||||||||||||| | ||| |||
Sbjct: 204 ggaattcatttgtcccccagtgtcctctactcctttgtgtgtcctttattctttttcaag 263

                                                                       
Query: 64  gtaaccatcaatttaatctttcttaacttcttcctggtct--ctttt--ctgcatggtaa 119
            | |||| |||||| |||||||||| |||| |||||||||  |||||  |||  ||  ||
Sbjct: 264 atcaccagcaatttgatctttcttaccttcatcctggtctcccttttggctg--tg--aa 319

                                                                       
Query: 120 tattggatttcttaaaaag--atatcttaatgagaatagagagatgac-catgttgtcaa 176
           |||||||||||||||||||  |||| || ||| || |||||||||||| || || |||||
Sbjct: 320 tattggatttcttaaaaaggtatat-tt-atgggactagagagatgacaca-gtggtcaa 376

                                                                       
Query: 177 gagcatttttgta-tcgcaaaaaaacaggatttgttttcttgaattcatatccaatggtt 235
           ||||| ||||| | || ||| || || ||||||| || ||||||||| |||||||||| |
Sbjct: 377 gagcacttttgcactc-caagaagactggatttggttccttgaattcgtatccaatggct 435

                                                                       
Query: 236 aacaatcagctttaatgccagctccatgggatctgacaactcatgtctctgtggtcacct 295
            ||||||| ||||||||||||||||| |||| |||||||||||| |||||||||||||||
Sbjct: 436 cacaatcatctttaatgccagctccaggggacctgacaactcatttctctgtggtcacct 495

                                                                       
Query: 296 atactctcaagctcatgccctattcccacccatataaa-taaagataataaatctt-aaa 353
            ||||| ||||| |||||||||  ||||| |||| ||| |||| |||||||||||| |||
Sbjct: 496 gtactcacaagcacatgccctacacccactcata-aaagtaaaaataataaatcttaaaa 554

                                                                       
Query: 354 tgagagacaagtttcatttggtttcattattcaaatgaaaccttattttgtctgatttct 413
            ||||||||||||||||| || ||||||||| ||||||||||| ||||| ||||||||||
Sbjct: 555 agagagacaagtttcattaggcttcattatttaaatgaaacctgattttctctgatttct 614

                                                                       
Query: 414 gagtctctttggatcagttttctgggttgcactttgtgtaacaa-gtccacattcctttt 472
           |||||| |||||||||||||| ||||||  || ||||||  ||| || ||||||||||||
Sbjct: 615 gagtctgtttggatcagttttttgggtttaaccttgtgttccaaggt-cacattcctttt 673

                                                                       
Query: 473 -tcctatcactctttccccaacttgttgtttctccctcagacttcataccagagattcta 531
            | ||  ||||| |||||||| || |||||||| |||||||||||| |||||||||||||
Sbjct: 674 at-ctgccactcgttccccaa-tt-ttgtttct-cctcagacttcacaccagagattcta 729

                                                                       
Query: 532 tctatgtcctgtctttctccccttcttcctaaaaatccatcttttgctgccatccctgct 591
            ||||||    | ||| |||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 730 cctatgt----t-tttttcccctacttcctaaacatccatcttttgctgccatccctgct 784

                                                                       
Query: 592 cctctaagtcatatctccaattccttgctcact--atgcagaccacagaagctaagtcct 649
           |||| || ||  |||||||||| |||||||  |  ||||||| || ||||| ||||||||
Sbjct: 785 cctccaattcccatctccaatttcttgctc--ttcatgcagaacagagaagataagtcct 842

                                                 
Query: 650 gtccattttagcctgtgtgatattagatgtatgcactg 687
           || ||||||||| |||||||||||||||||||| ||||
Sbjct: 843 gttcattttagcatgtgtgatattagatgtatgtactg 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1081
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1071
Effective search space:   726138
Effective search space used:   726138
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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