Query= MSMg01no153_e04.b1 MSMg01no153_e04.b1 CHROMAT_FILE:
MSMg01no153_e04.b1 PHD_FILE: MSMg01no153_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:35 2005
(650 letters)
>mm_chrY_1489256_1490306
Length = 1051
Score = 534 bits (276), Expect = e-155
Identities = 506/588 (86%), Gaps = 24/588 (4%)
Strand = Plus / Plus
Query: 80 aaatatgtttagaatcattaaattacacacttaaaaataaataaatcaatggattta-tt 138
|||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 280 aaatgtgtttagaatcattaaattacacacttacagataaataaatcaatggatttattt 339
Query: 139 tagtatataaatcaaactccaataaaact-tctgaaaaggcttaaccaaatgtgatgctt 197
|||||| ||||| | ||| ||||||| || | ||||||||||| |||| |||| |||||
Sbjct: 340 tagtatgtaaattatacttcaataaagctgt-tgaaaaggcttggccaactgtggtgctt 398
Query: 198 ctcatgtgagttgttatttgtcatagcacctgtgatttagctgttaatagtactgggttt 257
|||||||||||||||||||||||| || |||||||| ||||||||||||||| ||| |||
Sbjct: 399 ctcatgtgagttgttatttgtcatggctcctgtgatgtagctgttaatagtagtggattt 458
Query: 258 tattacttatgaatcagacaccaatacatccatgaaggggttacactccattccctcagg 317
|||||| |||||||||||||||||| | ||||||| || | ||||||| ||||||| ||
Sbjct: 459 tattacagatgaatcagacaccaatatagccatgaatggataacactcccttccctctgg 518
Query: 318 agaaagaaatcaattaaaagtcattggatta----att----gatgagaatttttctggt 369
|||||||||| || ||||| |||||||||| ||| |||||| |||||||||||
Sbjct: 519 agaaagaaatgaagtaaaattcattggatttcttgatttcttgatgaggatttttctggt 578
Query: 370 caaagctgagttggcaggaagttggacagactggggtgtctcccagaaagtgtaacacaa 429
|| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||
Sbjct: 579 catagctgagttggcaggaagttggacagtttggggtgtcccccagtaagtgtaacacac 638
Query: 430 attagaatgtaggtgttgtgaggctataagg-catattcactacttgtcacctattattg 488
| ||||||||||||| | |||||||||| || |||||||||| | ||||||||||||||
Sbjct: 639 actagaatgtaggtgctatgaggctata-ggacatattcacttcatgtcacctattatt- 696
Query: 489 a-gtattc-ttgctgttggaggtacttacccttcacttctgccatggagggaagtgggtc 546
| |||| | |||||| || ||||||||||||||||||||||| || |||||||||||||
Sbjct: 697 atgtat-cattgctggtgaaggtacttacccttcacttctgcaatacagggaagtgggtc 755
Query: 547 ta--cacctaggcagaat-gaggagattgtgatgagtaatgtttgtgtgggttatggagc 603
|| || || ||||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct: 756 tatgcag--agacagaagagaggagatggtgttgagtaatgtttgtgtgggttatggagg 813
Query: 604 aggataaaccttaatgtgctgggattttatttatctcc-aacttgaca 650
| ||||||| ||| |||||||||| ||||||| | ||| |||||||||
Sbjct: 814 aagataaacattactgtgctgggactttattttt-tcccaacttgaca 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1051
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1041
Effective search space: 666240
Effective search space used: 666240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_e04.g1 MSMg01no153_e04.g1 CHROMAT_FILE:
MSMg01no153_e04.g1 PHD_FILE: MSMg01no153_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:36 2005
(622 letters)
>mm_chrY_1265963_1266987
Length = 1025
Score = 578 bits (299), Expect = e-169
Identities = 551/649 (84%), Gaps = 41/649 (6%)
Strand = Plus / Plus
Query: 1 catcaaaa-aaattgtatgaagttctcaaggaattaattaatgtagttcttaatatacaa 59
|||||||| | |||||||||| |||||||||||||||| || |||||||||||||||| |
Sbjct: 191 catcaaaatatattgtatgaaattctcaaggaattaatgaaagtagttcttaatatacca 250
Query: 60 tgtctttactgaacatatacagaccacttatatt-tcaatctcctaaatagcaactc--a 116
||||| |||||||||||||||||||||||||||| || |||||||||||| |||||| |
Sbjct: 251 tgtctgtactgaacatatacagaccacttatattgtc-atctcctaaataacaactccta 309
Query: 117 ttttgtagcacttacattacattaagtgcaaaagtaatccagagattatttaaaataaag 176
| ||||| || |||| ||||||| |||||||| |||||||||| |||||||||||||
Sbjct: 310 ---tatagcagtttcattgcattaagggcaaaagtcatccagagatcatttaaaataaag 366
Query: 177 aaggatcaggggatatggcccagag--acaatgcc-atgtgtgtgttcaaacattcacct 233
|||||||||| | ||||||||| | | || ||| || ||| || ||| ||||||||||
Sbjct: 367 aaggatcaggcaagatggcccaggggta-aa-gccaat-tgtttggtcagacattcacct 423
Query: 234 acaacaccagtgcttatgattttgggaggggcagagataggaagatgactgtggcttcct 293
| |||| ||||||| | || | |||||||||||||| || |||| ||||||||||||||
Sbjct: 424 ataacaacagtgctcagga--tggggaggggcagagacagaaagaagactgtggcttcct 481
Query: 294 gaaagccagc------------tcagcaagaaacccagtcacaaggggataagttatgta 341
|||||| ||| |||||||||||||| |||| ||||| | || ||| |
Sbjct: 482 gaaagcaagcctcactcctaggtcagcaagaaaccctgtcataagggaacaaatta-g-- 538
Query: 342 gga---aaagagtagatcacactatacccttccctagcctctgaacttacctgtacagtt 398
||| || ||| ||| |||||| |||| |||||| ||||||||| |||||||||||| |
Sbjct: 539 ggagtgaaggagcagaacacactgtacctttccctggcctctgaatttacctgtacaggt 598
Query: 399 ctctatgcagactcacataaatatgattaaaatatgcaagaggttattttgcatagctta 458
|| |||||| || |||||||||||||||||| ||| |||||||||| ||||||||| |||
Sbjct: 599 ctgtatgcacacacacataaatatgattaaagtatacaagaggttactttgcatagatta 658
Query: 459 tat-tcaaaagcaatgttgttttagactagaaacctgaggac-tttatatcattatagtt 516
||| | ||||||||||||||||||| ||||| |||||||||| |||||||||||| | |
Sbjct: 659 tatgt-aaaagcaatgttgttttagcctagagacctgaggacttttatatcattaggggt 717
Query: 517 cctggagcaaactcccaagatatagatg---atgggtatatcttcttactgtgcaaagga 573
|||||||||||||||| | ||||||| | |||||||||||||||||||||||||||||
Sbjct: 718 cctggagcaaactccccatatataga-gagaatgggtatatcttcttactgtgcaaagga 776
Query: 574 aacctcagttaagtgtgtgtgtcagtgactccaaacagctttcctcctc 622
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aacctcagttaagtgtgtgtgtcagtgactccaaacagctttcctcctc 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1025
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1015
Effective search space: 621180
Effective search space used: 621180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
