BAC Information

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BAC

Clone NameMSMg01-167C05
ChromosomeY (Build37)
Map Location 1,655,339 - 1,655,996
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143
Downstream geneLOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167C05.T7 (MSMg01no167_c05.b1)MSMg01-167C05.TJ (MSMg01no167_c05.g1)
ACCAG364739AG364740
length733725
length of high quality
(start - end)		690 (44 - 733)292 (329 - 620)
definitionCHROMAT_FILE: MSMg01no167_c05.b1 PHD_FILE: MSMg01no167_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:50 2005CHROMAT_FILE: MSMg01no167_c05.g1 PHD_FILE: MSMg01no167_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:50 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGG
AATTCTCTGCTGATCCGCACAGGAAAGCACAGAAATCTAGGACTATACAG
AAATATCCAGTTCCAGAGGGGAAAAAAAAAAAGAAACAGGGAGGAATTGG
AAAGTACAAATAAGAATTTGAATGTACAGATTGTAAATCCTGTCTCTGGG
AGTAATAATCAAGATACTTTGAAAGGAACAATCAAGCCATGTTTAAAAGA
CTGGACACACCATTTGGCATATGTTATATAAATCAGTAAAAATAATTAAA
AATGTCTCATTAAAATTCACAACAGTCCCCTTAAGTTTTTTCTTCTGGTT
TTCTTCTTTAAATATCTTATTGAATCTGAAGTGATGGCTCAGCATTTCTG
AACACTGGCAGCTCATGCACAGCATACACTTGGACTTGCCACATTTCCAT
TGGCTGTTTACAACTTCTTCTATTTTAGTAACCACAGGGAATCCACACTC
CCCTTTCCCATGAGATAATGTATCCATACCTATACAGAGAATTCAAAACA
AACAAAATCTCTTCAATCTGTTTCACCAATCATACATTAGGTCCAATGCT
TGGGTGCTTTCTGTTTCAGGCTCACAATGATCAATGGTATATACTTTCTA
GGTTGTATAACTGCACTTCATTTCTCTACCAGGAACCTTTCCTCAGATTC
TGTCCTCATCAAGAATCCCATCTAATACCATCA

CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCACAAAATTCTTTGTATATTTTGAATATTAGCCTTC
GATCAGATGTAGGGTTAGTAAAGAACTTTTCTCCATTACTAGGTTGCCAT
TTTGTCCTATTGACAGTGTCCTTTGCCTTACAGAACCTTTTCAGTTTCAG
AAGGTCCCATTTGTTAATTGACCAAGATATGCTTTCAGACATGAACATGG
CATGACTGTCCTAAAAGAGGCTATGCCATCAACTGACTGAGACAGATGCA
GATATTTACAGCCAATCATTGGTCNTAACCCAGGAACCCCTATGGAAGAG
TTTGATCAAAGACTGAAGGAACTGAAGGGAATTACAACCCTATTGGAAGA
ACAACACCATGAAAAAACTAGATTTCTCAGAATTCTCAGGTACTAAGCCA
CCAACCAAAAAGCATACATGTACTAGTACATAACCCCTACTATACATATG
TAGCAGAGGATTGCATTGTCTGGCCTCAGTGCGATGAGGGTGTGTGCTTG
TCCTGTGGAAGCTTTATGTCCCCAGAAAAGTTGAATTCTAGAGAGGTGGG
TGGGAGAGTAACATTTTAGAGAATGGAGGGAAGTGTGGTACGGCCCCCCG
TCATTTTTTTTTTTTTTTTCCCCGCCCCTTCCATATCCTCTAATTGTGCT
TTCCTCCTTGTTACATATATCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_c05.b1 MSMg01no167_c05.b1 CHROMAT_FILE:
MSMg01no167_c05.b1 PHD_FILE: MSMg01no167_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:50 2005
         (690 letters)



>mm_chrY_1655133_1656216
          Length = 1084

 Score =  458 bits (237), Expect = e-133
 Identities = 565/681 (82%), Gaps = 40/681 (5%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctctgctgatccgcacaggaaagcacag-aaatctaggactatacagaaatatcc 65
           |||||||||||||| | ||||||||| ||| || ||| |||||||||| |||||| || |
Sbjct: 207 gaattctctgctgaactgcacaggaaggcatagaaaaactaggactatccagaaaaatgc 266

                                                                       
Query: 66  agttccagaggggaaa-aaaaa---aaagaaacagg-gaggaattggaaag-tacaaata 119
           ||| |||||    ||| |||||   ||| ||| ||| |||||||||| |||  | |||||
Sbjct: 267 agtcccaga----aaagaaaaacagaaa-aaa-aggagaggaattggtaagcaaaaaata 320

                                                                       
Query: 120 agaatttgaatgtacagattgtaaatcctgtctctgggagtaataatcaagata-ctttg 178
           ||    ||||||| | |||||||||||||||||||| || |||||||||||| | |||| 
Sbjct: 321 ag----tgaatgt-ctgattgtaaatcctgtctctgagaataataatcaagacaccttt- 374

                                                                       
Query: 179 aaaggaacaatcaagccatgtttaaaag-actggacacaccatttggcatatgttatata 237
           ||||||||||| || |||||  |||||| ||| ||||||| || ||||| ||||||||||
Sbjct: 375 aaaggaacaatgaaaccatgagtaaaagaactagacacacaatatggcaaatgttatata 434

                                                                       
Query: 238 aatcagtaaaaataattaaaaatgtctcattaaaattcacaacagtccccttaagttttt 297
           |||||||| ||| |||||||||||| ||||||||| | | || | |||||||| ||||| 
Sbjct: 435 aatcagtagaaacaattaaaaatgtgtcattaaaaatgaaaatattccccttatgttttc 494

                                                                       
Query: 298 tcttctggtttt-cttctttaaatatcttattgaatctgaagtgatggctcag-catttc 355
           |||| ||||||| ||| ||||||| |||||||||||||| || ||| | |||| | ||||
Sbjct: 495 tcttgtggttttcctt-tttaaatgtcttattgaatctggagggattgatcagac-tttc 552

                                                                       
Query: 356 tgaacactggcagctcatgcacagcatacacttggacttgccacat-ttccattggctgt 414
           || |||| | |||| ||| ||||||||||||||||||||||||| | ||||||||||| |
Sbjct: 553 tggacaccgccagcacatacacagcatacacttggacttgccac-tcttccattggctct 611

                                                                       
Query: 415 ttacaacttcttctattttagtaaccacagggaat-ccacactcccct-ttcccatgaga 472
           |||||||| | |||| || ||| ||||||||| || ||||||| |||| |||||||| ||
Sbjct: 612 ttacaactccgtctacttcagtgaccacaggg-atgccacact-ccctcttcccatggga 669

                                                                       
Query: 473 taatgtatccatacctatacagagaattcaaaacaaacaaaatctcttcaatctgtttca 532
            ||||||| |||||||||||||||||||||||||||||||||| |||||||  ||| |||
Sbjct: 670 caatgtattcatacctatacagagaattcaaaacaaacaaaatgtcttcaaagtgtctca 729

                                                                       
Query: 533 ccaatcatacattaggtccaatg-cttgggtgctttctgtttcaggctcacaatgatcaa 591
            |||| || |||||||||||||| ||  | |||| || | |||||||||||   ||| ||
Sbjct: 730 gcaattatgcattaggtccaatgtctcag-tgctctcagcttcaggctcac---gattaa 785

                                                                       
Query: 592 tggtatatacttt-ctaggttgtataactgcacttca-tttctctaccaggaacctttcc 649
           |||| |||| ||| |||  ||||||||||||||| || ||| |||||| |||| ||| ||
Sbjct: 786 tggtttata-tttgctaccttgtataactgcactacagttt-tctacctggaaacttgcc 843

                                
Query: 650 tcagattctgtcctcatcaag 670
           |||||| ||||||||| ||||
Sbjct: 844 tcagatcctgtcctcagcaag 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1084
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1074
Effective search space:   730320
Effective search space used:   730320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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