BAC Information

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BAC

Clone NameMSMg01-181B03
ChromosomeY (Build37)
Map Location 2,603,659 - 2,603,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236
Downstream geneEG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181B03.T7 (MSMg01no181_b03.b1)MSMg01-181B03.TJ (MSMg01no181_b03.g1)
ACCAG374362AG374363
length733735
length of high quality
(start - end)
536 (45 - 580)395 (78 - 472)
definitionCHROMAT_FILE: MSMg01no181_b03.b1 PHD_FILE: MSMg01no181_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:28 2005CHROMAT_FILE: MSMg01no181_b03.g1 PHD_FILE: MSMg01no181_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCTCTATCCGCGTTTTGATTCCCATATCCTGAGATTAAAGTCCTT
TCTAAGCAGATCTCAACACCTTTTTTTTAAATTTTCTGTCTCACAGTTCT
TGAAGAATAGATGGGGGAGCAGAGAAAATTTCACCCCAAAAAATTGGCAA
TTAGTGGCTGCAGGTGTGAGGGCCAGTTTTCTTCATAGATTTGGCTCCTC
AGAGGCTGCCCATGTTCCAGTGGATGTGTTTCCCTAACCCCACATATGTA
GTCAGCACTAAATTCACTCAGTGGTCTTTATTAAAATGTGCATGGAATTA
AAGCTAAAAGTGATACAGGAGAAATGGAGAGCAATTCAAGGAGGAGAAGA
TGGGGATGGATTTACTCAAACTCATTATGTTTATGTACAAAGTTCTTCAG
CAAAACATTTAAAACTAAGTAAGTAAGTAAATAAGTAAATAAGTAAGTAA
TAAGCAAGCAAGCAAGTAAGTAAAAAATAAATATATGAGTAAATAAACAA
ATATATTTTTATGCAATATCACGTGCAATAGGCATGACAGTGTGTGTGTG
TGTGTGTGTGTGTGTCTTTGTGTGCGCGCCTTTGTGTGTGTGGGCATACC
TGCATACAGGTATGTTTGCTGCTACGTGTTAGCTTGATGATTAAAATATC
CCTTGCCCAATGGTAAGTGTTTCTATTACATTA
ACAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTAGCTTTAGACACTGACAGC
TGTGATGATTTAAGATAGGCAGCAGAGTGCTCACAGTATCACTAAGAGAT
GAACATTAGCTTGTTGTCATATTCACCCACACTCACACATACATAAACAC
ACACAAACACACACACACACATAAACACACACAACACTCACACAAACACA
CACGCACTCACACACCCACACACACACACACACAAACGCACACCAGCCAT
TGGAACACAAACCCCAGTAGTGACTCCCGTGACAGTTCTAAATATTTAGA
CACAGTCCCTAGTCAAAAAGTTCATGGAAACTAAGTCTTCAGGAACCATC
CTGGAAAAAATGCATCAAACTTGTCCTTACATTAGTAAGTGATTGAAACT
CTGTGACTTCTCTCAATGTTGTTTTACTATAAGTGCCTCCAAGTAATGAC
TTGCCAAATATCTAATCAATATCCAACTTTGTTCCCTGTCCTTCACCAAT
ATTCTAGGTACTCCTTGAGCGGATCCTGGGTTTGGAATTCATCAAGAATG
TTACCTGTAACAACCAGAGTTACCTCTAGTATTATAAGAGAGATTGTGAC
AGCCATCGCTATATTCTACATACAGTTAGAAATCTCAGGACAACTTTACG
AAAGTATGTTTAAAATATTTGTTAAACCTACGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_b03.b1 MSMg01no181_b03.b1 CHROMAT_FILE:
MSMg01no181_b03.b1 PHD_FILE: MSMg01no181_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:28 2005
         (536 letters)



>mm_chrY_2603455_2604390
          Length = 936

 Score =  139 bits (72), Expect = 4e-37
 Identities = 96/106 (90%), Gaps = 6/106 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctctatccgcgttttgattcccatatcctgagattaaagtcctttctaagca 64
           ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaattcatctctaactg-gttttgattcccatatcctgagattaaagtcctttctaagca 249

                                                         
Query: 65  gatctcaacaccttttt---tttaaattttctgtctcacagttctt 107
           || |||||||  |||||   |||||||||||||||||||| |||||
Sbjct: 248 gacctcaaca--tttttgtttttaaattttctgtctcacaattctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)