BAC Information

Click to search

BAC

Clone NameMSMg01-187H24
ChromosomeY (Build37)
Map Location 2,780,461 - 2,780,765
singlet/doubletsinglet
Overlap geneLOC100039652
Upstream geneVmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187H24.T7 (MSMg01no187_h24.b1)MSMg01-187H24.TJ (MSMg01no187_h24.g1)
ACCAG378827AG378828
length735737
length of high quality
(start - end)		323 (45 - 367)645 (93 - 737)
definitionCHROMAT_FILE: MSMg01no187_h24.b1 PHD_FILE: MSMg01no187_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:50 2005CHROMAT_FILE: MSMg01no187_h24.g1 PHD_FILE: MSMg01no187_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATGGGCAATGGTTATGGGTTGGGAGTGAATGCTGGACCAAGAC
TCTTCTCTACGAGAACTTCTGAGCATGTGAAGAAGACTATGCTAAACAGA
TTTGAGCTCCTAAAATTAATTTTATAAAAATAAGAAGTTAATAAGTCAGC
CATGGTGGTACATGCATTTAATCTCAGAACTCAGAAGGCAAGGACAGGCA
GATTTCTAAATTAGAGACCAGCCTGGTCTACAAAGTGAGTTCCAGGGAAG
CCAGTGCTATAGAGAGGAACCCTGTCTCAACAACAACAACAACAACAACA
AGTAAAAGAAAATATTATTAAAATCCCCCCCCCCCACAAACAAAAGAGAA
ATTCAAACAAAAAATAACAAAACAAACAATCAAATGGAGAAGTTAATAGG
AAGTGGTGGTGACCCATAACTTTAATCATAGTACTCAAGAGGCAGAGTGA
GGCAGACCTTAGTGAGATAAAGGCTAGTCTGGTCTACACAGTGAGTTTCC
TGACAGCCAAATCTAAACATACAGAAACTCAAATAAAATTAACCAAGCAG
GCAAACAAACAAACAAAGAAACAAAGAAACAAAAAAAAACAAGGACATAA
AAATAGTGTAATTAACAAGTAATTCTCTAGAGCTCAGAAGAATATACTCA
GATCAACATTTATTTCTTCAGCCCTGAGTTAATTN

CCTACTACTCCNTNCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGACAA
CCTGGGCTAAACAGAGAATCCCTGCCTCTAAAAAACAAAAAACAATAAAC
AAATAAAGAGAAAATGAATGACACACAGGCATACAGAAGAGGACTGGTCC
CAAAGACAGCTCTGTCCTAAATATACTAGAGCACATTGCTTCACAAAATG
AATTCTGAACATGCTCTCACATAGTGCATTTGAATATACTTTCTAGGTTA
ACCCCATATGATCACAAGAAACAAAAGGTAACAAGAAGATCAGAGTCAGA
AGTATATCTCAGACTCATGTCAAAGACAGTCTGGGAGGCACACCATGCTT
CGGTTTTCAAAGTTCAATAGAGTGGTTCTCCACCTTTTTAATACTGCGGT
TCCTTCATATATATACTTCCTTATGCTGTGTGGTGCCTCAACCGTAAAAC
TATTTTTTGCTGCTTCATAACTGAAATGTCCTACTGATATGAATTGTAAC
ATACATTTCTGACATACAGATAGTCTTAGACAACTCCTGTGAAATTTGTC
ACAAGGACTAGCAACCTACAGGTTGCCAACCACAGTGCCAGCAACTAGGA
AAACTAGCCAGCCCCTTGATTTTTACAATGTTGCCTTCCGTAACTGTGGT
AGAATAGATGTGCTCTATTTTAGTGGTCTAAGCATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_h24.b1 MSMg01no187_h24.b1 CHROMAT_FILE:
MSMg01no187_h24.b1 PHD_FILE: MSMg01no187_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:50 2005
         (323 letters)



>mm_chrY_2780257_2780979
          Length = 723

 Score =  513 bits (265), Expect = e-150
 Identities = 295/305 (96%), Gaps = 1/305 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgatgggcaatggttatgggttgggagtgaatgctggaccaagactcttctct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgatgggcaatggttatgggttgggagtgaatgctggaccaagactcttctct 264

                                                                       
Query: 65  acgagaacttctgagcatgtgaagaagactatgctaaacagatttgagctcctaaaatta 124
           | ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 aagagaacttctgagcaggtgaagaagactatgctaaacagttttgagctcctaaaatta 324

                                                                       
Query: 125 attttataaaaataagaagttaataagtcagccatggtggtacatgcatttaatctcaga 184
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||
Sbjct: 325 attttataaaaataagaagttaataagtcagccatggtggtacacacatttaatcccaga 384

                                                                       
Query: 185 actcagaaggcaa-ggacaggcagatttctaaattagagaccagcctggtctacaaagtg 243
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actcagaaggcaaaggataggcagatttctaaattagagaccagcctggtctacaaagtg 444

                                                                       
Query: 244 agttccagggaagccagtgctatagagaggaaccctgtctcaacaacaacaacaacaaca 303
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 agttccagggcagccagtgctatagagaggaaccctgtctcaacaacaacaacaacagca 504

                
Query: 304 acaag 308
           |||||
Sbjct: 505 acaag 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |