BAC Information

Click to search

BAC

Clone NameMSMg01-195I12
ChromosomeY (Build37)
Map Location 1,604,845 - 1,605,376
singlet/doubletsinglet
Overlap geneLOC100039381
Upstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373
Downstream geneLOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195I12.T7 (MSMg01no195_i12.b1)MSMg01-195I12.TJ (MSMg01no195_i12.g1)
ACCAG384012AG384013
length719753
length of high quality
(start - end)		533 (48 - 580)329 (74 - 402)
definitionCHROMAT_FILE: MSMg01no195_i12.b1 PHD_FILE: MSMg01no195_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:47 2005CHROMAT_FILE: MSMg01no195_i12.g1 PHD_FILE: MSMg01no195_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:47 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GTCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAACAATCTTGGACCCTATGAAAGTAATGGATTGTCCAAATGC
TCCCGGACTGAGAATCTTAGGGAAGCTCTAGGTTTTTTCTTAATCTGCAA
TGTCATTTAGACATTAGAGCAAGCAGAGATGATTTGCTCCTTCTCTTAGG
CAATCAGAATCTGGAAGACAACCGTTGTGAGCCTTGAGAGGGTTTGCTGG
AGGAGAAGGGATATTGACAGTGCTCTACCCAACCTGCAAGGCACACAGCT
AGACCTTGTTCCCTCTGATGCATAGAAGTGTCTGATGGTATTAGATGGGA
TTCTTGATGAGGACAGAATCTGAGGAAAGGTTCCTTTAGAGAAATGAAGT
GCAGTTATACAACCTAGAAAGTATATACCATTGATCATTGTGAGCCTGAA
ACAGAAAGCACCCACGCATTGGACCTAATGTATGATTGGCGAGACAGATT
GAAGAGATTTTGTTTGTTTTGAATTCTCTGTATAGGTATGGATACATTGT
CTCATGGGAAAGGGGAGTGCGGATTCCCTGCGGTTACTAATATAGAATAA
CCTGCATACCGTCCATGTATCTGTGGTTAGCCTCAGTTGTTGCCGTGCCT
GATTTGTTTTCGTTCTGAATCGTACAGCCACCTCTTTATACCGTACCCAG
TTCTTTGTACACCTCCTAN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTTACCAGGAAGAGGTAGGCGAAAC
ATCACCCCAGCAATTGTGTTCCTCTTTTCTTGCCTTTGGGAGGGCCTCAG
CAAACCTAGCCCTTTCTGAGCTTCCTAAAACTTGGAAGTTTTATTTGCTT
CTGAGTTGTAGGATCCTCCATCCTCCTTATAGGAAAAAATGTATGAGAAT
TTTGCTTCCTATAAAAACCCAGCAATGTTATATGTGTAGTTTTTTTTTTT
ATTTTGTTTTGTTTTAATCTCATGTCTGTCCCCAGCTGCAGATAGTTTTT
GTTTGAAATTCTAGTGATTCTTGAGAGTGAATAAAAGAAAGAGCTCCTGA
GAGGACCTAGGGCACATGCTGCTCCTGCTGCACCTGCTTTTGTTATCACA
GGATTATATGAGCAATGCTCTTGCCCATGTACCACGTTTGCGTACTTATA
TGTGTTATAGGTCTACTGATGAACCTCATTTGCCGTTAGCAGAACAACCA
GTGCCTATTTTATCACCCCTTGCCGACTACGAAAACTCAGCGTTATACGA
AATTTATCCGTATGGTCCATTACATATGCATTGTTCGTCTCCTTTGCCCT
CTTCCCTAATTACCCACACTCTTGTCTTCTCTCCTTTTATTAAACTCGCC
TCTCTTCCCTCCGCCTCTATTCGCTATTATTTCCTCCTCCTTTATTTTTA
TAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_i12.b1 MSMg01no195_i12.b1 CHROMAT_FILE:
MSMg01no195_i12.b1 PHD_FILE: MSMg01no195_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:47 2005
         (533 letters)



>mm_chrY_1604642_1605576
          Length = 935

 Score =  281 bits (145), Expect = 1e-79
 Identities = 445/561 (79%), Gaps = 61/561 (10%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaacaat-cttggaccctatgaaagtaatggattgtccaaatgctc--ccggac 61
           |||||||||| ||  ||||| |||  ||||||||||||||| ||||||  ||  | ||||
Sbjct: 204 gaattcaaac-atgtttggaacct-ggaaagtaatggattgcccaaat--tcaacaggac 259

                                                                       
Query: 62  tgagaatcttagggaagct-ctagg----ttttttcttaatctgcaa-tgtcatttagac 115
           |||| ||||| ||| || | |||||        ||||| |||||||| || |||||||||
Sbjct: 260 tgaggatcttgggggag-tgctagggaca----ttctttatctgcaattg-catttagac 313

                                                                       
Query: 116 attagagcaagcagagatgatttgctccttctctt-aggcaatc--a---gaat-ctgga 168
           ||| ||||||| ||||||| ||||||||||| ||| | | | ||  |   |  | |||||
Sbjct: 314 attggagcaagaagagatgctttgctccttcccttga-gtactcctattgg--tcctgga 370

                                                                       
Query: 169 agacaaccgttgtgagc-cttgagagggtttgctggaggagaagggatattgacagtgct 227
           || ||| |  |||||||  |||||||||||| ||||||| ||| ||| |||||||||  |
Sbjct: 371 agtcaaac--tgtgagcatttgagagggtttcctggaggggaaaggaaattgacagtatt 428

                                                                       
Query: 228 ctacccaacctgcaaggcacacagctagaccttgttccctct-gatgcatagaagtgtct 286
           |||||||| ||||| |||||| ||||||||||||||| |||| || ||||||||||||||
Sbjct: 429 ctacccaaactgcacggcacaaagctagaccttgttctctctgga-gcatagaagtgtct 487

                                                                       
Query: 287 gatggtattag-atggga---ttcttgatgaggacagaatctgaggaaaggttcc---tt 339
           |||||| || | ||||||   ||||| |  | ||||| |||||||||| ||||||     
Sbjct: 488 gatggtgtt-gcatgggatccttctt-a--aagacaggatctgaggaagggttccagg-- 541

                                                                       
Query: 340 tagagaaatgaagtgcagttatacaacctagaaagtatataccattgatcat--tgtgag 397
           |||||||||||||||||||||||||| || | |||| || |||||| |||||  || | |
Sbjct: 542 tagagaaatgaagtgcagttatacaagctggcaagtgtaaaccatttatcatcatg-g-g 599

                                                                       
Query: 398 cctgaaac--agaaagcacccacgcattggacctaatgtatgattggc--gagacagatt 453
           |||||| |  ||  ||||| ||  ||||| || || || || |||  |  ||||||| ||
Sbjct: 600 cctgaagctaag--agcacacaaacattgtacttactgcataatt--cctgagacagctt 655

                                                                       
Query: 454 gaagagattttgtttgttttgaattctctgtataggtatggatacattgtct-catggga 512
           ||||||||||||||||||||||||||||||| | ||| |||| ||||||||| | |||||
Sbjct: 656 gaagagattttgtttgttttgaattctctgtgtgggtttggaaacattgtctgc-tggga 714

                                
Query: 513 aaggggagtgcggattccctg 533
           | |||||||| ||| ||||||
Sbjct: 715 agggggagtgtggaatccctg 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 935
Length adjustment: 10
Effective length of query: 523
Effective length of database: 925
Effective search space:   483775
Effective search space used:   483775
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |