BAC Information

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BAC

Clone NameMSMg01-199L20
ChromosomeY (Build37)
Map Location 2,791,342 - 2,791,606
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199L20.T7 (MSMg01no199_l20.b1)MSMg01-199L20.TJ (MSMg01no199_l20.g1)
ACCAG386561AG386562
length764738
length of high quality
(start - end)
342 (73 - 414)328 (88 - 415)
definitionCHROMAT_FILE: MSMg01no199_l20.b1 PHD_FILE: MSMg01no199_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:24 2005CHROMAT_FILE: MSMg01no199_l20.g1 PHD_FILE: MSMg01no199_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:24 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGACTCCGCGGAA
TTCTTTGTTCATTTCCCGAACCCATTTATTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCCT
TTATTGAATTTCTGTACACCCACATACAACTTCTGAAACATATTTTTATA
CTGCTCATATAATTTGTTGTTGATCATGTCCCTGTAAAGTAAAGTAATGA
AAGCAGTCAAATTTATACAAATAGGAAAAGAACGCTCAAAAAAATTAAAT
TGTTCTTTTCATACAATAAAAAGAATATTAGCAGTAAAAAATCATCAAAT
GGGAAGTAATTACAGATTTTTTTTCCTAAGAGATTATCAGAGAAGTTTTA
TTTCATGTTTTAGATTCCCCCAATTAAAGTTTACAGACAGATAAATATAT
AGATAGATAGATAGATGATAGATAGATAGATAGATAGATAGATACATACA
CAATCTTTTCTACAAAATTAACTGTATTTCCCATTACGGTTTTATTCTGT
TCCACTACCTCATATGCCTAATTTTTTTTCCCATTCCGCCTTCTCCTCTA
CTCACTGTATAATCTTTCCCTTTCCATCACTTTCTTGCCTGTACACGTTT
CCGTTTTCTTCCCCCTTTCTGTCATTTTATTCCTCCTTCATCCTTCCTTT
TTTTATTCTTTGTTCCACTCCTTCTTTTTTCCCTTCCTCCTTTGTTTATC
TTTATCTTCCCCCG
CTCCTCCCTCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGTTGCCTATT
CAGTGACATTCAGAATTGCCTTTGGTATTACACTATCACTTAGAATAAAA
GCCAAATCACTCCCACATACAGGAATTTACAATGGTTTAGGCAGTAGATC
TGGCTGTGGTTTTAGGGTAATGAGATGGTTAGCTAGAGCCAAACTCCCTA
ATTAGAAATATGACTTGGGTGTGAAAGCCATTGCCCTAGGAGTGTAAGAC
CTCACACCTGGCTTCTAAGACTTTAGGTGACCTTAGATAGGGCTGACTTT
GTCTCAGTTGTTTTATTGACCAGTTCCTGCCTGTCTTTGTGTTTACATTC
CTCTGTTTTGTGTAAGAGCCATTACCCCCCCAGTAACCTCATTTGTACTT
TGCCAATGTGTCACCTAACTTCCCTATTTTCTTGTGTATAAAAAGTTTGA
TGCTCATTTTGACAAATGACATTCACATAGTACTCAATCTCACGTGTTCA
TCTTTCTGTCACTCCCATACTTCTTTGTCCTTCTCGGACTAGTGACTCTT
TCCATGCTTAAATAACCACCCAGAGCCCCTGCGTTATATTGCACATCTTC
TTACCCCCTCGTTTGTTTATTATTAGAAAAACGCCTTTACCCCCGCATTC
CCCTATGTATTCTCATCTACTATTACTCTTTTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_l20.b1 MSMg01no199_l20.b1 CHROMAT_FILE:
MSMg01no199_l20.b1 PHD_FILE: MSMg01no199_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:24 2005
         (342 letters)



>mm_chrY_2791066_2791806
          Length = 741

 Score =  422 bits (218), Expect = e-122
 Identities = 254/266 (95%), Gaps = 1/266 (0%)
 Strand = Plus / Plus

                                                                       
Query: 77  ctttattgaatttctgtacacccacatacaacttctgaaacatatttttatactgctcat 136
           |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 277 ctttattgaatttctgtatacccacatacaacttctaaaacatatttttatactggtcat 336

                                                                       
Query: 137 ataatttgttgttgatcatgtccctgtaaagtaaagtaatgaaagcagtcaaatttatac 196
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 337 ataatttgttgttgatcatgtccctgtaaagcaaagtaatgaaagcagtcaaatttatac 396

                                                                       
Query: 197 aaataggaaaagaacgctcaaaaaaattaaattgttcttttcatacaataaaaagaatat 256
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| | 
Sbjct: 397 aaataggaaaagaacgctcaaaaaaattaaattgttcttttcgtactataaaaagaaaac 456

                                                                       
Query: 257 tagcagtaaaaaatcatcaaatgggaagtaattacagattttttttcctaagagattatc 316
           |||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 457 tagcagtaaaaaatcatctaatgggaagttattacagattttttt-cctaagagattatc 515

                                     
Query: 317 agagaagttttatttcatgttttaga 342
           ||||||||||||||| ||||||||||
Sbjct: 516 agagaagttttattttatgttttaga 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 741
Length adjustment: 9
Effective length of query: 333
Effective length of database: 732
Effective search space:   243756
Effective search space used:   243756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)