BAC Information

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BAC

Clone NameMSMg01-203M04
ChromosomeY (Build37)
Map Location 1,792,456 - 1,792,815
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137
Downstream geneLOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203M04.T7 (MSMg01no203_m04.b1)MSMg01-203M04.TJ (MSMg01no203_m04.g1)
ACCAG388405AG388406
length729733
length of high quality
(start - end)
369 (45 - 413)338 (77 - 414)
definitionCHROMAT_FILE: MSMg01no203_m04.b1 PHD_FILE: MSMg01no203_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:02 2005CHROMAT_FILE: MSMg01no203_m04.g1 PHD_FILE: MSMg01no203_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGTCCATAACAATTGAGACAGCAGGTCCTCCTAAAGGGATACTCT
CCTCTTCAGCCTCCTTCAGTCTCCCTCCAATTCCCCAATGGTTCAGCAGA
TTCTGTCCATTGGTTGGTTGCAGACATATGCATCTGATTGTTTCAACTGC
TCATTAGGTCTTCAGAAGTGCATTCATGCTAGTATTCACATTACAATTAT
GTGAATTCAGAAGCCAGCAGAGTTCGTGGACTGCAAGCAGGTCTTCTGAA
AAAGCAATGCATGATATAATTACCTGAATTTTCTGGCAGTGCTCTTCAAT
ATTGTGTTCTACGTGATGCAATATTCCACTCTCTTTCTCTATCTCTGTCT
CTGTCCCTCTCTGCCCCCGCCTCTCTCTGTCTCTATGTCTCCCTCTCTCT
GTCTCTCTGTATCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCT
GTCTCTGTCTCTCTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTTTCTCTCTCTCTCTCTGTCCGTCTCTCTCAATATCTACTC
CTCCAACACTCAGTATGACTAACGATTCTCTTACCTTCTCTTCTATCAAC
GGTATGATATTTCACCGTCCTTCGCAATTTGTTATTCTGAATCTGATTAG
GGAAAGGATCCTTTATCTCTTGTGTTATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCCTAATCACTCCCATTCTCGG
GGTGAAATATTCAGGTGATGGGCACGCAATGAATCAGGAGCTGTCATGCC
ATATCAGGTGCTGAAATGTCACGCTGCAGGTTATAAAAGCAGCGCCATTT
TCCCGGTTCGGGATCTTCCTGATAAGCAAGCAATAAAGCTCTTGCTGTGG
AAGATTCTAGTTTGTTGTATCTTTCTTGCCGGTCGAGCGGGACGCAATAG
TGAATAGCTTTTACCTCCCTGCTGTTGCTCTCCTAGTACTGACCAGAAAC
TGAGGTGCCATTTCCAGCAGACTGTGCTAGGACATAGTCATAGAACACAT
CTTCCTTCGAAAGCACCCCCCAGGCTTCATTGGAAAAAACTTAAATCTGT
GAATATTGGTAACAGAGTCTGTACATAGCTCAGTTGACAGAGCGACTGCC
TAGCATTTAGCATGCCTAGGATTCAGTCATTATTGCTGCCTTTACTTTAT
CGCCTTCGGCGTTTCTACTTATTATATTGTAATACACTTGGGATCCTAGA
AAGGGATACCATGATGACCTAAGACCAAGACTGCCCACGATGTTGGTTAG
AGACCTCTCTTGTATCCTCGTCCAACGAGACTTGCATCCCGATTGACTCC
CATTAATGAGAATCCTCAGTTCCTATTCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_m04.b1 MSMg01no203_m04.b1 CHROMAT_FILE:
MSMg01no203_m04.b1 PHD_FILE: MSMg01no203_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:02 2005
         (369 letters)



>mm_chrY_1792098_1792866
          Length = 769

 Score =  516 bits (267), Expect = e-151
 Identities = 342/369 (92%), Gaps = 13/369 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctggtccat-aacaattgagacagcaggtcctcctaaagggatactctcctcttc 63
           |||||||||||| | || |||| ||||||||||||||||||||||||||| |||||||| 
Sbjct: 718 gaattctggtcc-tgaataattaagacagcaggtcctcctaaagggataccctcctctta 660

                                                                       
Query: 64  agcctccttcagtctccctccaattc-cccaatggttcagcagattctgtccattggttg 122
           |||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 659 agcctccttcagtctttctccaattcacccaatggttcagcagattctgtccattggttg 600

                                                                       
Query: 123 gttgcagacatatgcatctgattgtttcaactgctcattaggtcttcagaagtgcattca 182
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 599 gttgcagacatatgcatctgattgtttcaactgctcattaggtctgcagaagtgcattca 540

                                                                       
Query: 183 tgctagtattcacattacaattatgtgaattcagaagcca-gcaga-gttcgtggactgc 240
           |||||||||||||||||||||||||||||||||| || || ||||| ||| | |||||||
Sbjct: 539 tgctagtattcacattacaattatgtgaattcaggag-cacgcagaggtt-gcggactgc 482

                                                                       
Query: 241 aagcaggtcttctgaaaaagcaatgcatgatataattacctgaattttctggcagtgctc 300
           |||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 481 aagcaggtcttctgcaaaggcaatgcatgatataattacctgaattttctgtcagtgctc 422

                                                                       
Query: 301 ttcaatattgtgttctacgtgatgcaatattccactctctttctctatctctgtctctgt 360
           ||||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||  ||
Sbjct: 421 ttcaatattgtattctacgtgatgcaatattcctctctctttctct--ctctgtct--gt 366

                    
Query: 361 ccctctctg 369
           |  ||||||
Sbjct: 365 c--tctctg 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)