BAC Information

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BAC

Clone NameMSMg01-204N21
ChromosomeY (Build37)
Map Location 2,890,679 - 2,890,994
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204N21.T7 (MSMg01no204_n21.b1)MSMg01-204N21.TJ (MSMg01no204_n21.g1)
ACCAG389069AG389070
length739791
length of high quality
(start - end)		320 (45 - 364)202 (78 - 279)
definitionCHROMAT_FILE: MSMg01no204_n21.b1 PHD_FILE: MSMg01no204_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:34 2005CHROMAT_FILE: MSMg01no204_n21.g1 PHD_FILE: MSMg01no204_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:34 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTATTCTCCGTTTGCAGTTGTAAATGCTCGTGAGAGCAACGAACT
CCCTTTTTCAGATGGAAAAGGGTTACTGACAGACATGTCAGGAGAAACCG
GCTGCCACCCTTTGGGACATCCCAGGAGTTCTGAGGGAGTTCTAGGGATA
CCTGGAGATCTCCTATCAGTGTGCCAAGTGAGAGTGTGCTCACTCGGCTG
TCTGTTTCTGTTACTGGGTGCCAAGTGAGTGTGTGCTTTCTTGGCCATCT
TATTGGGGCCTGGTCTTGGTTATTGTAATCTTTTTTGTGTATATGTTTTT
TTTTTTCCCTGTATGTGACTCCGCCCCCCCCACCGACTATTATCATGCCC
CTTGGACTGACCCCCCCCCCCACAACTGAAATTAAGACTAACACTCACAT
TCTCTCTGTGGATGTCTGAAATCGATTTTAGAGAACTTTCTGATCTACAG
AATGGCCAGCTTTGACGATAGTTGGCCACCAAAGGGCACTCTTCGTTTGG
CTCTGATCCCATTTCTCAATTTCGTTTTTACCGATTTTAACCTTGCCCCT
CTTTCAGCATATTCCGTCAATCCCTCTTCACCCTTAATAAATTATTACCC
GTATTTCCCTTCTCCCTTTTTGCCTAATTCCCCTTTTTACCATTAACTTT
ATCATTCCCTCTAGTCACGTTTTCTCTCCTATCACATTT

CCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATC
ATGAATGGGTGTTGGATTTTGTCAAATGTGTTCACAGCTTCTAATGAGAT
GATCATGTGGTTTTTGTTTTTGAGTTTGTTATATACTGGATTACATTGAT
GGATTTCCGTACATTGAACCATCCCTGCATCCCTGGGATGAAACCTACTT
GGTCAGGATGGATGATTGTTTTGATGCGTTCCTGCATTCGTCCTCCCCCC
ACCTACCCCACACCAACAAACATTTTTTTTTTTTCCTCACCCCCCACCCA
AACCGAAAGAATTTTTTTTTTTTCCCCCCCCCCCCCCCCCTGTTATATAT
TATGTTATTTTTTTATTTATTTCTGCCTCCCCCAAAAAAAAAAAAATAAA
GGGGGGGGGGGCTTTCCCCTCTCCTTCATATCCCCCTCCCCCTATTCCTT
TCTCACCCCTCTCCCATATCCCCTCCATTACCCCCTTATCACCACCCCCC
ATCTCTCAACTCCTTCCTCCCCTACCATTCAACCCTCTTCCTCTCTTTTC
CCACCCCTTCTCCCCTCTTCCCTATCTCCCCCCCCTTTTCCTACATTCTC
TTCCATACCCCTCTCTCTCCATTCTCCCTTTCTCCCCCCTTACTCTCCAC
CCTCCTCTATCCTTTTTACTTTTCACCCATCTCTATACCCCCTCCCTTCC
CCCCATCCCTTACAATATTTCCTATCAACTATAAATTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_n21.b1 MSMg01no204_n21.b1 CHROMAT_FILE:
MSMg01no204_n21.b1 PHD_FILE: MSMg01no204_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:34 2005
         (320 letters)



>mm_chrY_2890475_2891194
          Length = 720

 Score =  420 bits (217), Expect = e-122
 Identities = 292/317 (92%), Gaps = 2/317 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactattctccgtttgcagttgtaaatgctcgtgagagcaacgaactcccttttt 64
           ||||| ||||||||| |||| |||||||| |||||||||||||||||||| ||||| |  
Sbjct: 205 gaatttactattctcggtttacagttgtacatgctcgtgagagcaacgaaatccctctcc 264

                                                                       
Query: 65  cagatggaaaagggttactgacagacatgtcaggagaaaccggctgccaccctttgggac 124
           ||||||||| |||||||||||||||||||| |||||||||||||||||| ||| ||||||
Sbjct: 265 cagatggaagagggttactgacagacatgtgaggagaaaccggctgccagcctgtgggac 324

                                                                       
Query: 125 atcccaggagttctgagggagttctagggatacctggagatctcctatcagtgtgccaag 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 325 atcccaggagttctgagggagttccagggatacctggagatctcctatcagggtgccaag 384

                                                                       
Query: 185 tgagagtgtgctcactcggctgtctgtttctgttactgggtgccaagtgagtgtgtgctt 244
            |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| 
Sbjct: 385 agagagtgtgctcactcggttgtctgtttctgttactgggtgccaagtgagtgtatgctc 444

                                                                       
Query: 245 tcttggccatcttattggggcctggtcttggttattgtaatcttttt-tgtgtatatgtt 303
           |||  |||||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 445 tctcagccatcttattggggcctggtcttggttattgtaatctttttctgggtatatatt 504

                            
Query: 304 tttttttttccctgtat 320
            ||||||| ||||||||
Sbjct: 505 gttttttt-ccctgtat 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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