BAC Information

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BAC

Clone NameMSMg01-214D15
ChromosomeY (Build37)
Map Location 1,311,293 - 1,311,634
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214D15.T7 (MSMg01no214_d15.b1)MSMg01-214D15.TJ (MSMg01no214_d15.g1)
ACCAG394948AG394949
length716721
length of high quality
(start - end)
340 (377 - 716)645 (77 - 721)
definitionCHROMAT_FILE: MSMg01no214_d15.b1 PHD_FILE: MSMg01no214_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:29 2005CHROMAT_FILE: MSMg01no214_d15.g1 PHD_FILE: MSMg01no214_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCCAGTATCCTTTCTCTTCTATTTGGTTAGAGCTGACTCAAACCT
GCAAGGTCCAGGATTGACCCAATAGACTCCCTCATCCAATTTGGTATGTG
TGTTTCCAGGTAGTGTTACAGATCCTAACATGCTTAGACCACTAAAATAG
AGCACATCTATTCTACCACAGTTACGGAAGGCAACATTGTAAAAATCAAG
GGGCTGGCTAGTTTTCCTAGTTGCTGGCACTGTGGTTGGCAACCTGTAGG
TTGCTAGTCCTTGTGACAAATTTCACAGGAGTTGTCCTAGACTATCTGTA
TGTCTGATTTGTATGTCACCACTCATATCAGTAGGACATTTCAGTTATGA
AGCAGCAAAAAATATTTTTACGGTTGGGGCACACACAGCATAAGGAAGTA
TATATATGAAGGAACCGCAGTATTAAAAAGGTGGAGAACCACTCTATTGA
ACTTTGAAAACTGAAGCATGGTGTGCCTCCCAGACTGTCTTTGACATGAG
TCTGAGATATACTTCTGACTCTGATCTTCTTGTTACCTTTTGTTTCTTGT
GATCATATGGGGTTAACCTAGAAAGTATATTCAAATGCACTATGTGAGAT
CATGTTCAGAATTCATTTTGTGAAGCAATGTGCTCTAGTATATTTAGGAC
AGAGCTGTCTTTGGGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCAAAATATATTGCATGAAGTT
CTCAAGGAATTAATTAATGTACCCCTTAATACTGTACTGAACATATACAG
ACCACTTATATTTCAATTTCCTAAATAACATCTCCTTTTATAGCACTCAC
ATTACATTAAGGGCAAAAGTAATCCAGAGATTATTTAAAATAAAGAAGGA
TCAGGGGATATGGCCCAGAGGCAATGCCATGTGTGTTTTCAAACATTCAC
CTAGAACACCAGTGCTTATGATTTTGGGAGGGGCAGAGACAGGAAGATAT
CTGTGGCTTCCTGAAAGCCAGCCTCACTACCAGCTCAGCAACAAACCCTG
TCATAAGGGGATAAATTAGGGAGTAAAGTAGCAGAACACACTACACCCTT
CCCTACCCTCTGAACTTACCTGTACAATTCTCTATGCAGACACACATAAA
TATGATTAGAATATACAAGAGGTTACTTTGCATAGCTTATATGCAAATGC
AATGTTGTTTTAGGCTAGAGACCTGAGACTTTATATCATTAGGGTTCCAG
AAGCAAACACCCCAAATATAGAGAATAGATAAATCTTCTTACTCTGCAAA
GGAGACCTCAGTTAAGTGTGTGTGTCAGTGACACCAAAAGGTTTCCTCCT
CTATGTTCATTTATATAGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_d15.g1 MSMg01no214_d15.g1 CHROMAT_FILE:
MSMg01no214_d15.g1 PHD_FILE: MSMg01no214_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:29 2005
         (645 letters)



>mm_chrY_1310590_1311634
          Length = 1045

 Score =  319 bits (165), Expect = 4e-91
 Identities = 303/349 (86%), Gaps = 16/349 (4%)
 Strand = Plus / Minus

                                                                        
Query: 267  gaagat-atctgtggcttcctgaaagccagcctcactacc-agctcagcaacaaaccct- 323
            |||||| | ||||||||||||||||||||||| |||| || |||||||||| | | ||| 
Sbjct: 1045 gaagatga-ctgtggcttcctgaaagccagccccact-cctagctcagcaagaga-cctg 989

                                                                        
Query: 324  gtcataagggga-taaattagggagtaaagtagcagaacacactacacccttccctaccc 382
            |||| || |||| ||||||||||||| ||| |||||| ||||| | ||||||||||| ||
Sbjct: 988  gtcacaa-gggagtaaattagggagtgaaggagcagagcacacaatacccttccctagcc 930

                                                                        
Query: 383  tctgaacttacctgtacaattctctatgcagacacacataaatatgattagaa-tataca 441
            ||||||||||||||||||  ||| |||||| ||||||||||||||||||| || |||| |
Sbjct: 929  tctgaacttacctgtacaggtctgtatgcatacacacataaatatgatta-aagtatata 871

                                                                        
Query: 442  agaggttact-ttgcatagcttatatgcaaatgcaatgttgttttaggctagagacctga 500
            |||||||| | |||||||| ||||||||||| |||||||||| |||| |||| |||||||
Sbjct: 870  agaggtta-tgttgcatagattatatgcaaaagcaatgttgtcttagcctagggacctga 812

                                                                        
Query: 501  -gac-tttatatcattagg-gttccagaagcaaacaccccaaatatagagaatagataaa 557
             ||| |||||||||||||| | ||| | ||||||| ||||| ||||||||||| | || |
Sbjct: 811  ggacttttatatcattaggag-tcctggagcaaactccccagatatagagaatgggtata 753

                                                             
Query: 558  tcttcttactctgcaaaggagacctcagttaagtgtgtgtgtcagtgac 606
             ||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 752  ccttcttactgtgcaaaggaaacctcagttaagtgtgtgtgtcagtgac 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)