BAC Information

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BAC

Clone NameMSMg01-268M16
ChromosomeY (Build37)
Map Location 1,316,803 - 1,317,155
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268M16.T7 (MSMg01no268_m16.b1)MSMg01-268M16.TJ (MSMg01no268_m16.g1)
ACCAG409102AG409103
length736739
length of high quality
(start - end)
359 (376 - 734)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no268_m16.b1 PHD_FILE: MSMg01no268_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:08 2005CHROMAT_FILE: MSMg01no268_m16.g1 PHD_FILE: MSMg01no268_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:08 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATCCAATGGCTAACAATCAGCTTTAATGCCAGCTCCATGGGAT
CTGACAACTCATGTCTCTGTGGCCACCTATACTCTCAAGCTACTACCCAC
CCATATAAATAAAGATAATAAATCTTAAAATGAGAGACAAGTTTCATTTG
GTTTCATTATTCAAATGAAACCTGATTTTGTCTGATTTCTGAGTCTCTTT
GGATCAGTTTTCTGGGTTGCACTTTGTGTAACAAGGCCACATTCCTTTTA
TCTATCACTCTTTCCCCCAACTTGTTGTTTCTCCCTCAGACTTCATTCCA
GAGATTCTATCTATGTTCTGTCTTTCTCCCCTTCTTCCTAAAAATCCATC
TTTTGCTGCCATCCCTGCTCCTCTAAATACATATCTCCAATTCCTTGCTC
ACTATGCAGACCACAGAATCTAAGTCCTGTCCATTTTAGCCTGTGTGATA
TTAGATGTATGCACTGTTCACAGCCTGAGTTGCAACTTTCATCTTGCTTT
GATGTTCTTTCCACCATAGTCCATCTCTTCCAACAATGTGTTCACTAAAA
GCATGTCATGTCACACGTATTAATTTTTAGAACAAAACAAATTTTATTGA
CAAAGATACTGAGGTTGTCAAAGACCCATAGGTACCCAACACAGGAAAAT
AAACATTTTTTTCAATCCTATAAGTTTACTTTTCTG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCGTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCCAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGGAAATTGGTCATAATACTACCAGAGGATC
CAGCAATACCTCTCCTGGTATATCCCCCCCCCACTGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATCGCCACATTATTTATAATAGTCAG
AAGCTGGAAAGAACTCAGATACCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTC
CTAAACACATGAAACTCACGAAAAATGAAGACTGAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_m16.b1 MSMg01no268_m16.b1 CHROMAT_FILE:
MSMg01no268_m16.b1 PHD_FILE: MSMg01no268_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:08 2005
         (359 letters)



>mm_chrY_1316602_1317361
          Length = 760

 Score =  344 bits (178), Expect = 4e-99
 Identities = 312/360 (86%), Gaps = 15/360 (4%)
 Strand = Plus / Plus

                                                                       
Query: 2   tccccttcttcctaaaaatccatcttttgctgccatccctgctcctctaaatacatatct 61
           |||||| ||||||||| |||||||||||||||||||||||||||||| || | |  ||||
Sbjct: 202 tcccctacttcctaaacatccatcttttgctgccatccctgctcctccaattccc-atct 260

                                                                       
Query: 62  ccaattccttgctcact--atgcagaccacagaatctaagtcctgtccattttagcctgt 119
           |||||| |||||||  |  ||||||| || ||||  |||||||||| ||||||||| |||
Sbjct: 261 ccaatttcttgctc--ttcatgcagaacagagaagataagtcctgttcattttagcatgt 318

                                                                       
Query: 120 gtgatattagatgtatgcactgttcacagcctgagttgcaa-ctttcatcttgctttgat 178
           ||||||||||||||||| |||||||||| ||||| ||| || |||||||| | |||||||
Sbjct: 319 gtgatattagatgtatgtactgttcacaacctgaattg-aagctttcatcgtcctttgat 377

                                                                       
Query: 179 gttctttccaccatagtccatctcttccaacaatgtgttcactaaaagcatgtcatgtca 238
           |||| ||||||||||| || ||||||||| ||| ||||||||| | |||||||||||| |
Sbjct: 378 gttccttccaccatagcccgtctcttccaccaaagtgttcactcacagcatgtcatgtaa 437

                                                                       
Query: 239 cacgtatt-aatttttagaacaaaacaaattttattgacaaagatactgaggttgtcaaa 297
           |||| ||| |||||||||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct: 438 cacg-atttaatttttagagccaaacaaattttattggcaaagatactgaggttgtcaaa 496

                                                                       
Query: 298 gacccataggtacccaacaca--ggaaaataaacattt--ttttcaatcctataagttta 353
           ||||| ||| || | ||||||  ||||||  |||||||  ||||||||||||||||||||
Sbjct: 497 gacccttagataacaaacacactggaaaa--aacatttatttttcaatcctataagttta 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 760
Length adjustment: 9
Effective length of query: 350
Effective length of database: 751
Effective search space:   262850
Effective search space used:   262850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)