BAC Information

Click to search

BAC

Clone NameMSMg01-291A22
ChromosomeY (Build37)
Map Location 1,311,208 - 1,311,882
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291A22.T7 (MSMg01no291_a22.b1)MSMg01-291A22.TJ (MSMg01no291_a22.g1)
ACCAG420164AG420165
length766765
length of high quality
(start - end)		320 (38 - 357)690 (67 - 756)
definitionCHROMAT_FILE: MSMg01no291_a22.b1 PHD_FILE: MSMg01no291_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:45 2005CHROMAT_FILE: MSMg01no291_a22.g1 PHD_FILE: MSMg01no291_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:45 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATA
TGACCTCCCCAAACTTCACAGGAGACTATGAGAACTTCTCTATCTCTCAA
GAGGATCAGCCCTCTTCTCCAAATACACATTCTTATCCACCTGCACAAGG
GCTGTTGGTCCTTCTCCATGCCTGCATAAGTCTCCATAATATATTCCAAA
TGCCTGAAAAAGCTCTGGATTTTACTTCATCTTCCAAAGGGCCCTTGGAA
CCTGTTTGCCCATCAAGTAGTCTATGACACCTGAAATATCTACACAGAAG
TTGTTATCCAATTCTCTAGCTGAAGAAAATTTTCTTGGAACTTCCACTGT
TACACAATTTTGTCTAAAAACTTCACTCAATGCCCATGAGGCTCTTAGAC
ATTTTACACATGTCCATGAAGCTCTAAGAGAGGCCACATCTACGCAGGTA
TCTCTAGGGCCTTCTCCTAATTCTGAAGCTATTGTCAAGACTTGTACATA
TACACAAGGAAATTTAGACCTTCACCATCTGTGCAAAAGGTCATATGTCT
ATCATATCTGAACAGGGTGCTTTACAATTATTTCCATCTACCCTAGAGTG
TTTATTTTCCTTGTCTTGTCTGGTTGAAAGCAGTAGACATTTGCCCTCTA
CCAAAGTGATCCACAGGCATCCAGTTTCTAGGAATTAAAAAAAAAAAAAA
AAAAAAAAACAAAAACTAAAAAAAAAAAACAAACAAACAAACAAAAAAAC
CAGGTTAATTGTTGAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATCAAAATATATTGCATGAAGTTCTCAAGGAAT
TAATTAATGTAGTTCTTAATACTGTACTGAACATATACAGACCACTTATA
TTTCAATTTCCTAAATAACATCTCCTTTTATAGCACTTACATTACATTAA
GTGCAAAAGTAATCCAGAGATTATTTAAAATAAAGAAGGATATGGGGATA
TGGCCCAGAGGCAATGCCATGTGTGTTTTCAAACATTCACCTACAACACC
AGTGCTTAGGATTTTGGGAGGGGCAGAGACAGGAAGATGACTGTGGCTTC
CTGAAAGCCAGCCTCACTACCAGCTCAGCAACAAACCCTGTCACAAGGGG
ATAAATTAGGCAGTAAAGTAGCAGAACACACTAAACCCTTCCCTAGCCTC
TGAACTTACCTGTACAGTTCTCTATGCAGACACACATAAATATGATTAGA
ATATACAAGAGGTTACTTTGCATAGCTTATATGCAAATGCAATGTTGTTT
TAGACTTGAAACCTGAGACTTTATATCATTACGGTTCCAGAAGCAAACAC
CCCAAATATAGAGAATAGATAAATCTTCTTACTCTGCAAAGGAGACCTCA
GTTAAGTGTGTGTGTCAGTGACACCAAAAGGTTTCCTCCTCTATGTTCAT
TTATATAGCATAGAATGATCTGTAAATAATGAAAATATGAAAACAAAGCT
TTTTCACAATTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_a22.g1 MSMg01no291_a22.g1 CHROMAT_FILE:
MSMg01no291_a22.g1 PHD_FILE: MSMg01no291_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:45 2005
         (690 letters)



>mm_chrY_1310792_1311882
          Length = 1091

 Score =  588 bits (304), Expect = e-172
 Identities = 589/690 (85%), Gaps = 37/690 (5%)
 Strand = Plus / Minus

                                                                        
Query: 23   ttctcaaggaattaattaatgtagttc-tta-ata------ctgtactgaacatatacag 74
            |||||||||||||||| || || |||| ||| |||      |||||||||||||||||||
Sbjct: 1091 ttctcaaggaattaataaaagtggttctttatataccacatctgtactgaacatatacag 1032

                                                                        
Query: 75   accacttatatttcaatttcctaaataacatctccttttatagcacttacattacattaa 134
            |||||||||||| | || |||||||||||| |||||| ||||||| || |||| ||||||
Sbjct: 1031 accacttatattgccatctcctaaataacaactccttgtatagcagtttcattgcattaa 972

                                                                        
Query: 135  gtgcaaaagtaatccagagattatttaaaataaagaaggatatggggatatggcccagag 194
            | ||||||||||||||||||| ||||||||||||||| ||  || ||| ||||||||| |
Sbjct: 971  gggcaaaagtaatccagagatcatttaaaataaagaaagacctgtggagatggcccaggg 912

                                                                        
Query: 195  gcaatgccatgtgtgttttcaaacattcacctacaacaccagtgcttaggattttgggag 254
            | |  |||| ||| ||  ||  |||||||||||||||| ||||||||||||  | |||||
Sbjct: 911  gta--gccaagtgagtgatcccacattcacctacaacaacagtgcttagga--tggggag 856

                                                                        
Query: 255  gggcagagacaggaagatgactgtggcttcctgaaagccagcctcactacc-agctcagc 313
            ||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct: 855  gggcagagacaggaagatgactgtggcttcctgaaagccagccccact-cctagctcagc 797

                                                                        
Query: 314  aacaaaccct-gtcacaagggga-taaattaggcagtaaagtagcagaacacactaa-ac 370
            || | | ||| ||||||| |||| ||||||||| ||| ||| |||||| ||||| || ||
Sbjct: 796  aagaga-cctggtcacaa-gggagtaaattagggagtgaaggagcagagcacac-aatac 740

                                                                        
Query: 371  ccttccctagcctctgaacttacctgtacagttctctatgcagacacacataaatatgat 430
            ||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||
Sbjct: 739  ccttccctagcctctgaacttacctgtacaggtctgtatgcatacacacataaatatgat 680

                                                                        
Query: 431  tagaa-tatacaagaggttact-ttgcatagcttatatgcaaatgcaatgttgttttaga 488
            || || |||| ||||||||| | |||||||| ||||||||||| |||||||||| |||| 
Sbjct: 679  ta-aagtatataagaggtta-tgttgcatagattatatgcaaaagcaatgttgtcttagc 622

                                                                        
Query: 489  cttgaaacctgag-acttt-atatcattacg-gttccagaagcaaacaccccaaatatag 545
            || |  ||||||| ||||| ||||||||| | || || | ||||||| ||||| ||||||
Sbjct: 621  ctagggacctgaggacttttatatcattaggagt-cctggagcaaactccccagatatag 563

                                                                        
Query: 546  agaatagataaatcttcttactctgcaaaggagacctcagttaagtgtgtgtgtcagtga 605
            ||||| | || | ||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 562  agaatgggtataccttcttactgtgcaaaggaaacctcagttaagtgtgtgtgtcagtga 503

                                                                        
Query: 606  caccaaa-aggtttcctcctctatg-ttc--atttatatagcatagaatga-tctgtaaa 660
            | ||| | |  ||||||| |||| | |||  |||||||  ||| ||||| | ||||||||
Sbjct: 502  ctccacacatctttcctcttcta-gattcctatttata--gcacagaat-agtctgtaaa 447

                                          
Query: 661  taatgaaaatatgaaaacaaagctttttca 690
            |||||||||||||||||||| |||||||||
Sbjct: 446  taatgaaaatatgaaaacaaggctttttca 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1091
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1081
Effective search space:   735080
Effective search space used:   735080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |