BAC Information

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BAC

Clone NameMSMg01-291B14
ChromosomeY (Build37)
Map Location 1,489,535 - 1,489,835
singlet/doubletsinglet
Overlap genenone
Upstream geneUty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2
Downstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291B14.T7 (MSMg01no291_b14.b1)MSMg01-291B14.TJ (MSMg01no291_b14.g1)
ACCAG420192AG420193
length745741
length of high quality
(start - end)		374 (45 - 418)294 (74 - 367)
definitionCHROMAT_FILE: MSMg01no291_b14.b1 PHD_FILE: MSMg01no291_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:48 2005CHROMAT_FILE: MSMg01no291_b14.g1 PHD_FILE: MSMg01no291_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:48 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTATTGTATTTTAGTAGATTTCAATATCATATGAAGTACCAGAAA
ATGAGTGAAAAATGACATTGGCCAAATGTGTTTAGAATCATTAAATTACA
CACTTAAAAATAAATAAATCAATGGATTTATTTAGTATATAAATCAAACT
CCAATAAAACTTCTGAAAAGGCTTAACCAAATGTGATGCTTCTCATGTGA
GTTGTTATTTGTCATAGCACCTGTGATTTAGCTGTTAATAGTACTGGGTT
TTATTACTTATGAATCAGACACCAATACATCCATGAAGGGGTTACACTCC
ATTTCCTCAGGAGAAAGAAATCAATTAAAAGTCATTGGATTTCTTGATGA
GAATTTTTCTGGTCACACCCGACCTGGCAGGAAGTTGGACAGACTGGGGT
GTCTCCTAGAAAGTGTAACACAAATTAGAATGTAGGTGTTGTGAGGCTAT
AAGGCATATTCACTACTTGTCACCTATTATTGAGTATTCTTGCTGTTGGA
GGTACTTACCCTTCACTTCTGCCATGGAGGGAAGTGGGTCTACACCTAGG
CAGAATGAGGAGATTGTGATGAGTAATGTTTGTGTGGGTTATGGAGCAGG
ATAAACCTTAATGTGCTGGGATTTTATTTATCTCCAACTTGACAATCTAG
CGTCACCTTAGGAGAGAGAACAATTGAAGAATTGTCTCTATTCAC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTACTCAAAGTCTTTGGAGACAACAGG
GATTTTATTAGGTTCTCATGGAGAATGGGAGAGTGTTTGTGCTCCATTAA
AAAGGTACTCACATTCACTATTTTGATGCCATTCTTTCTATTTGAGTGTG
CTTTGTACTTTTGTCTGCTATGTGTTGTGTTCTGTGTTCTTTGTTACTAA
CTCTAGGGTTCTTCCCATACTTGGAAAATGAAAGTCAGTTTGAAAACCTT
TCATATTTGTTCTCTGTATAGAAACTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTTTCTCTCTCTCCCTCTCTCTCTCTCTCTTTGAGT
TTTCAAGACAGTGCCCCCCCCTCTCACCATGATAATCTGGAAATCTCCCT
GTATACCAGGTTGGCCTCGAACTTAGAAATTCACCTGTCTCTGCTTTTCG
AGTGCTGGGGTTAAAGGTGTTTGCCACCACCACTTGGAAATATGATTCTT
CTAAAAAATTATACTTATGAGTCCTTTTGCATCACAAATCAGATCATAAT
TTCATGGAAGGCACTTCCAATTGAAAACGCATCTTTCTGATCAATCAATG
GCGTATTCTATGGATATACTTAAGGTCGATTATGACCCATAAGCGATTGT
TCCTCAATAAATCCTTATCACCCTGCATTTCCTGTATACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_b14.b1 MSMg01no291_b14.b1 CHROMAT_FILE:
MSMg01no291_b14.b1 PHD_FILE: MSMg01no291_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:48 2005
         (374 letters)



>mm_chrY_1489256_1490030
          Length = 775

 Score =  294 bits (152), Expect = 6e-84
 Identities = 262/302 (86%), Gaps = 11/302 (3%)
 Strand = Plus / Plus

                                                                       
Query: 80  aaatgtgtttagaatcattaaattacacacttaaaaataaataaatcaatggattta-tt 138
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 280 aaatgtgtttagaatcattaaattacacacttacagataaataaatcaatggatttattt 339

                                                                       
Query: 139 tagtatataaatcaaactccaataaaact-tctgaaaaggcttaaccaaatgtgatgctt 197
           |||||| ||||| | ||| ||||||| || | |||||||||||  |||| |||| |||||
Sbjct: 340 tagtatgtaaattatacttcaataaagctgt-tgaaaaggcttggccaactgtggtgctt 398

                                                                       
Query: 198 ctcatgtgagttgttatttgtcatagcacctgtgatttagctgttaatagtactgggttt 257
           |||||||||||||||||||||||| || |||||||| ||||||||||||||| ||| |||
Sbjct: 399 ctcatgtgagttgttatttgtcatggctcctgtgatgtagctgttaatagtagtggattt 458

                                                                       
Query: 258 tattacttatgaatcagacaccaatacatccatgaaggggttacactccatttcctcagg 317
           ||||||  |||||||||||||||||| | ||||||| || | ||||||| || |||| ||
Sbjct: 459 tattacagatgaatcagacaccaatatagccatgaatggataacactcccttccctctgg 518

                                                                       
Query: 318 agaaagaaatcaattaaaagtcattggatttcttgat-----ga-ga--atttttctggt 369
           |||||||||| || ||||| |||||||||||||||||     || ||  |||||||||||
Sbjct: 519 agaaagaaatgaagtaaaattcattggatttcttgatttcttgatgaggatttttctggt 578

             
Query: 370 ca 371
           ||
Sbjct: 579 ca 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 775
Length adjustment: 9
Effective length of query: 365
Effective length of database: 766
Effective search space:   279590
Effective search space used:   279590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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