BAC Information

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BAC

Clone NameMSMg01-303H03
ChromosomeY (Build37)
Map Location 2,432,846 - 2,433,280
singlet/doubletsinglet
Overlap geneLOC676356
Upstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581
Downstream geneLOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303H03.T7 (MSMg01no303_h03.b1)MSMg01-303H03.TJ (MSMg01no303_h03.g1)
ACCAG429037AG429038
length726723
length of high quality
(start - end)
249 (69 - 317)504 (72 - 575)
definitionCHROMAT_FILE: MSMg01no303_h03.b1 PHD_FILE: MSMg01no303_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:22 2005CHROMAT_FILE: MSMg01no303_h03.g1 PHD_FILE: MSMg01no303_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:22 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCCTGTGTTCCGGAGATGGGACTTGATGCATTAGGGACTAATAAGACAT
CACTGACATTACCGTTAGGCGAAGAAGGTTTGGAGCCCTCTTTGTCTGAT
GGGGCCTGTTGCTTGACAAGAGAGTTCTTCTCCAAAATGCTTTGGAGGAG
AATTGGAAAGAATACAGTTATGTAGGGTAGGGAACAAACTTTTGAACTCC
TTCTGGAAGAGGAGGCATTTATGAATTTCTTTTAAGCACACGTGGGAAGT
CTATGGGATGCCTGGTCTTTATGTGCAATGTCCCATAGAGTCTTGGAAAC
TTTGCGTTAGTTCTCAAAACTTTTTGGTGCATAAGGACCTGCCCTGAGAA
TTTGAAGATCCCACATCTCCTTGGTTATATTGGGAAGGGTGCAGGGAACC
TTGAATGTGTGTCGAAATTACCTGTCCATGTTGTCCAGCAGACGATGGCC
CAGGCACTGTGTTATCTTCTTTGAATTTGCGACTGGTATCTCCAGCCCTG
TGTTTGGAAGATGCTGCAGGCACTCTGGCACCCGACTGGTCAATATCCCT
AGGTTATTCAAACCCACTGGACATAGGCTGACTTCTTTTCACCTGTCTAT
GCATGGCCCCTGCCTATGAGGCCTCTCATTTTCTTGGTGAAGGTGGCAAA
ATTCATTGACTGGTACTTTGCTCCTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTATTTGAAACAAAGTGATAGGATCCAT
CTATCTCTTCAAGGATATCTCTGTTTTGTTCAAAAAGGAGAAAAATGCAA
TCCAAGTTCAGGATCTTGATTCCTTATCCATGCATCTTAAACCCATAGGG
GCTAGCCAGAATGTAAGGTCAGAAGTCTAAACTTCACCTATACTACAACT
AACTCTGAAGATATCTAGCAATCTCCAGTTCCTTTCTGGTACTTACATAC
ACCAAGTCTGCATTAAGGAATATGGTCTAGTGTGAGATAGTGCCAGCAGT
TAATTGCAAAATCCCACTATGAGTTGAGTTGTATATATACTGAGACATCT
GTAATATAGACACACATGCATATTCACAAATACTCACAGAAAGAGGCAAG
AAGTAGCGGAGCTGAAACTTAGAAATCCTCAAGGAAGAGAATGAAAATCT
TGTAAGGCACAGAGGTAAGAGAAAAACTGTGTCTTTCTGCACAAAATCAG
GACATTCTGTCTTCCATCACTGAATGGGAAGGCTCACTATCCCTTATCGC
TATCTGATAAGGTACAGACAGCTGATGAAGGACGAATAGCAAGTCTTCAT
CAAAGGTATTGACTTTGAAGGTTATAGATTGCTCATGCTCTACTGTAAGC
CAGATGTCTTAGACGTTATGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_h03.g1 MSMg01no303_h03.g1 CHROMAT_FILE:
MSMg01no303_h03.g1 PHD_FILE: MSMg01no303_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:22 2005
         (504 letters)



>mm_chrY_2432590_2433498
          Length = 909

 Score =  342 bits (177), Expect = 3e-98
 Identities = 376/457 (82%), Gaps = 39/457 (8%)
 Strand = Plus / Plus

                                                                       
Query: 57  gttcaaaaaggagaaaaatgcaatccaag-ttcaggatcttgattccttatccatgcatc 115
           |||||| ||| |||||||| |||| | || ||||||||||||| |||  |||| ||||||
Sbjct: 257 gttcaagaagaagaaaaattcaatgc-agtttcaggatcttga-tccccatccctgcatc 314

                                                                       
Query: 116 ttaaacccatagg--ggctagccagaatgtaaggtcagaagtctaaacttcacctatact 173
           |||| ||||||||  ||  || ||||| || |||||||||||||||||||||||||||||
Sbjct: 315 ttaatcccatagggtgg--agtcagaaggttaggtcagaagtctaaacttcacctatact 372

                                                                       
Query: 174 acaactaactctgaagatatctagcaatctccagttcctttctggtactta--catacac 231
           ||||| |||| ||||||| |||||| |||||| ||| || |||||||||||  ||  |||
Sbjct: 373 acaaccaactgtgaagatttctagccatctcctgtttctgtctggtacttagtca--cac 430

                                                                       
Query: 232 caagtctgcattaaggaata-tg---gtctagtgtgagatagtgccagcagttaattgca 287
           ||||||||| |||||| ||| ||   ||||||||||||||||||||||||| | ||||||
Sbjct: 431 caagtctgccttaaggcatactgcaagtctagtgtgagatagtgccagcagatgattgca 490

                                                                       
Query: 288 aaatcccactatgagttgagttgta--tatatactgagacatctgtaatatagacacaca 345
           ||| ||||||||| ||||| |||||  || | | |||||||||| |||||||||||||||
Sbjct: 491 aaaacccactatgtgttgacttgtacgtaaa-a-tgagacatctataatatagacacaca 548

                                                                       
Query: 346 tg--catattcacaaatactcacagaaagaggcaagaagtagcggagctgaaacttagaa 403
            |  ||||  |||| ||||||||||||||||| ||||||| | | ||||||  ||||| |
Sbjct: 549 cgtacata--cacacatactcacagaaagaggtaagaagtggagaagctgagtcttagga 606

                                                                       
Query: 404 atcctcaaggaagagaatga----aaatcttgtaaggcacagaggtaagagaaaaactgt 459
           | ||||||||||||||  ||    ||||||||||||||||||||||          ||||
Sbjct: 607 accctcaaggaagaga--gagtagaaatcttgtaaggcacagaggt----------ctgt 654

                                                
Query: 460 gtctttctgcacaaaatcaggacattctgtcttccat 496
           |||| ||||||||||||| ||  |||||| |||||||
Sbjct: 655 gtctatctgcacaaaatcgggttattctggcttccat 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 909
Length adjustment: 10
Effective length of query: 494
Effective length of database: 899
Effective search space:   444106
Effective search space used:   444106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)