Query= MSMg01no316_d05.b1 MSMg01no316_d05.b1 CHROMAT_FILE:
MSMg01no316_d05.b1 PHD_FILE: MSMg01no316_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:53 2005
(629 letters)
>mm_chrX_30515160_30516188
Length = 1029
Score = 526 bits (272), Expect = e-153
Identities = 550/660 (83%), Gaps = 57/660 (8%)
Strand = Plus / Plus
Query: 1 tgggacttgatgcattagggactaataagacatcactgacattaccgttagccgaagaag 60
||||||||||| |||| ||||| ||| ||| ||||||||||||||| || | |||| ||
Sbjct: 180 tgggacttgatacatttgggacaaatgagaaatcactgacattacctttgggagaaggag 239
Query: 61 gtttggagccctctttgtctgatggggcctgttg--------cttgacaaga-gagttct 111
||||||| ||||| |||||||||||| ||||||| |||||| ||| ||| |||
Sbjct: 240 gtttggatccctccttgtctgatgggacctgttgtaggtccccttgaccagaggag-tct 298
Query: 112 tctccaaaatgctttggaggagaattggaaagaatacagt--tatgtagggtag-ggaac 168
| ||||| ||||||||||||||||||||||||| | ||| ||||||||||| || ||
Sbjct: 299 tgtccaacatgctttggaggagaattggaaagact--agtgacatgtagggtagagg-ac 355
Query: 169 aaactttt-gaactccttctggaagaggaggcatttatgaatttcttttaagcacacgtg 227
|| ||||| |||||||||||||||||||| |||| ||||| |||||||| |||||| |||
Sbjct: 356 aaccttttggaactccttctggaagaggaagcatgtatgattttcttttcagcacaagtg 415
Query: 228 ggaagtctatgggatgcctg-gtcagatgtgcaatgtcccatagagtcttggaaa-cttt 285
|||||||| ||||||||||| | |||||||| ||||||||||||| ||||||||| |||
Sbjct: 416 ggaagtctttgggatgcctgag-cagatgtggaatgtcccatagactcttggaaatattt 474
Query: 286 gcgttagttctcaaaact-ttttgg--tgcataaggacctg-ccctgagaat-tt----- 335
| |||||||| || || | | |||| || || |||| | | ||||||| || ||
Sbjct: 475 g-gttagttc-cagaa-tatcttgggttg-at-aggaacagtccctgagcatcttgagga 529
Query: 336 ------gaagatcccagatctccttggttagattgggaagggtgtagg-gaaccttgaat 388
||||||||||||||||||||| ||||| ||||||||||| || |||||||||||
Sbjct: 530 gaagtggaagatcccagatctccttggctagatcgggaagggtgt-ggagaaccttgaat 588
Query: 389 gtgtggggaaattacctgtccatgttgtccagcagacgatggcccaggcactgtgttatc 448
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct: 589 ttgtggggaaattacctgtccatgttgtccagcagaagatggccgaggcactgtgtgatc 648
Query: 449 ttctttgaa-tttgtgactggtatctccag-ccctgtgtttggaagatgctgcaggcact 506
||||||||| ||| | ||||| |||||||| ||| |||||||||||||| ||||||||||
Sbjct: 649 ttctttgaacttttt-actggcatctccagtccc-gtgtttggaagatgttgcaggcact 706
Query: 507 ctggcacccgactggtcaaaatccctaggttcttcaaacccagtggacataggctgactt 566
||||||||| ||||||| |||||| |||||||||||||| |||||||||||| ||| |||
Sbjct: 707 ctggcacccaactggtctaaatccataggttcttcaaacacagtggacatagactggctt 766
Query: 567 cttttcacctgtc-----tatgcatggacacagcagatgaggcaactcattttctggtgg 621
||| |||||| || ||||| | ||||| ||||||||| ||| |||||||||||
Sbjct: 767 cttgtcacct-tcccaggtatgc--g--cacagaagatgaggctgctctttttctggtgg 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_d05.g1 MSMg01no316_d05.g1 CHROMAT_FILE:
MSMg01no316_d05.g1 PHD_FILE: MSMg01no316_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:53 2005
(246 letters)
>mm_chrY_2791046_2791691
Length = 646
Score = 257 bits (133), Expect = 4e-73
Identities = 145/149 (97%)
Strand = Plus / Plus
Query: 97 ctttattgaatttctgtacacccacatacaacttctgaaacatatttttatactgctcat 156
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 297 ctttattgaatttctgtatacccacatacaacttctaaaacatatttttatactggtcat 356
Query: 157 ataatttgttgttgatcatgtccctgtaaagtaaagtaatgaaagcagtcaaatttatac 216
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 357 ataatttgttgttgatcatgtccctgtaaagcaaagtaatgaaagcagtcaaatttatac 416
Query: 217 aaataggaaaagaacgctcaaaaaaatta 245
|||||||||||||||||||||||||||||
Sbjct: 417 aaataggaaaagaacgctcaaaaaaatta 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
