BAC Information

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BAC

Clone NameMSMg01-318B14
ChromosomeY (Build37)
Map Location 1,655,958 - 1,656,293
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143
Downstream geneLOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318B14.T7 (MSMg01no318_b14.b1)MSMg01-318B14.TJ (MSMg01no318_b14.g1)
ACCAG437989AG437990
length755752
length of high quality
(start - end)		679 (77 - 755)344 (74 - 417)
definitionCHROMAT_FILE: MSMg01no318_b14.b1 PHD_FILE: MSMg01no318_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:12 2005CHROMAT_FILE: MSMg01no318_b14.g1 PHD_FILE: MSMg01no318_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGTAGATCCGCG
GAATTCTAACTCTGTTGCACAGATAGTAATGCCTGATTTCTTTCATTATC
TCTCTTACAGTACTAGAGGTAAATCTGAATGTCACTGAATAGGCAGCATC
CTTGGTGAATTCAAAGACCATAGTTTGCTCAAGGAATGCCTAGGACAGGA
ATTCCTAGGTGAGGTATCTAACTTAGCAATATGTCAAAAGCAATCCTTAG
AGGCACTTACAAAAAAGCTATATTAAGGGAAAGCACACAGATCCATTTAC
CGACTAAAGCAAGGACATTGGAACATTCATTATACAGGTTACCATGAATA
CAGGAGACTAAGTTTCCGTGAAGTTTTCGCCTCGGGACCATGTCTAGGCT
TTTCGGCCTGTCAGGTGGGCCACCACCGCCGTGTTTGTAGCAGTAGCTGA
AATCAAGGCATTTGGAGGAAAATGGATGGAAGGAGAGTCTTTTGTTAGGT
GAGTTAACACAGATTTGGAATAAGGTAATTAACATAGTTTTGCTCTCATA
CGGGTTTGAGGCCATTTTTATATAATTTCGTGCATGTGTGAGGTTGAGTG
ATAGTATTCTCTTGCAGAAAGAGAGAAAACCTAATATATTACTTATCATA
ATGAACATAAAGGGGAGTTAGCAATTGCTGTATTATTGCTGTGATCAACC
ACTATTACCAAGGCAACTAGTAGAAGGAAAGCTTTTTTTGTCTTATCATT
CCAGA

NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACAATTTTGGACCCTATGAAAGTAAT
GGATTGTCCAAATGCTCCCGGACTGAGAATCTTAGGGAAGCTCTAGGTTT
TTTCTTAATCTGTAATGGCATTTAGACATTAGAGCAAGCAGAGATGATTT
GCTCCTTCTCTTAGGCAATCAGATTTTATTCTGGAAGACAACCGTTGTGA
GCCTTGAGAGGGTTTGCTGGAGGAGAAGGGATATTGACAGTGCTCTACCC
AACCTGCAAGGCACACAGCTAGACCTTGTTCCCTCTGATGCATAGAAGTG
TCTGATGGTATTAGATGGGATTCTTGATGAGGACAGAATCTGAGGAAAGG
TTCCTGGTAGAGAAATGACCCGCACCTATACAACCTAGAAAGTATATACC
ATTGATCATTGTGAGCCTGAAATAGAAAGCACCCAAGCATTGGACCTAAT
GTATGATTGGTGAGACAGATTGAAGAGATTTTGTTTGTTTTGAATTCTCT
GTATAGGTATGGATACATTGTCTCATGGGAAGGGGGAGTGTGGATTCCCT
GTGGTTACTAAAATAGAAGAAGTTGTAAACAGCCTATGGAAATGTGGCAA
GTCCAAGTGTATGCTGTGCATGAGTTGCCAGTGTTCAGAAATGCTGAGCC
ATCACTTCAGATTCAATAAGATATTTAAAGAAGAAAACCAGAAGAAAAAA
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_b14.g1 MSMg01no318_b14.g1 CHROMAT_FILE:
MSMg01no318_b14.g1 PHD_FILE: MSMg01no318_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:12 2005
         (344 letters)



>mm_chrY_1655758_1656499
          Length = 742

 Score =  331 bits (171), Expect = 5e-95
 Identities = 299/343 (87%), Gaps = 12/343 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaattttggaccctatgaaagtaatggattgtccaaatgctcccggactgagaatctt 60
           ||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 536 aacaagtttggaccctatgaaagtaatagattgcccaaatgctcctggactgagaatctt 477

                                                                       
Query: 61  agggaagct-ctaggttttttcttaatctgtaatggcatttagacattagagcaagcaga 119
            ||||| || |||||  ||||||||||||| ||||||||||||| ||| |||||||  ||
Sbjct: 476 ggggaa-ctgctagggattttcttaatctgcaatggcatttagatattggagcaagtgga 418

                                                                       
Query: 120 gatgatttgctccttctcttaggcaatcagattt-tattctggaagacaaccgttgtgag 178
           |||| |||||||||||| ||||||| |||||||| | |  |||||||||| | |||||||
Sbjct: 417 gatgctttgctccttcttttaggcactcagatttgtct--tggaagacaaactttgtgag 360

                                                                       
Query: 179 c-cttgagagggtttgctggaggagaagggatattgacagtgctctacccaacctgcaag 237
           |  |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
Sbjct: 359 catttgagagggtttgctggaggagaagggatattgacagtgctctaaccaaactgcatg 300

                                                                       
Query: 238 gcacacagctagaccttgttccctctgat-gcatagaagtgtctgatggtattag-atgg 295
           |||||||||||||| |||||||||||| | |||||||| | ||||||||| || | ||| 
Sbjct: 299 gcacacagctagactttgttccctctg-tagcatagaattttctgatggtgtt-gcatg- 243

                                                      
Query: 296 gattcttgatgaggacagaatctgaggaaaggttcctggtaga 338
            || |||| ||||||||| |||||||| ||| |||| ||||||
Sbjct: 242 -atccttgctgaggacaggatctgaggcaagtttccaggtaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 742
Length adjustment: 9
Effective length of query: 335
Effective length of database: 733
Effective search space:   245555
Effective search space used:   245555
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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