BAC Information

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BAC

Clone NameMSMg01-319I08
ChromosomeY (Build37)
Map Location 1,311,555 - 1,311,883
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319I08.T7 (MSMg01no319_i08.b1)MSMg01-319I08.TJ (MSMg01no319_i08.g1)
ACCAG439022AG439023
length722725
length of high quality
(start - end)		680 (43 - 722)348 (74 - 421)
definitionCHROMAT_FILE: MSMg01no319_i08.b1 PHD_FILE: MSMg01no319_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:52 2005CHROMAT_FILE: MSMg01no319_i08.g1 PHD_FILE: MSMg01no319_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:53 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACCTAGGATGCTGCCTATTCAGTGACATTCAGATTTACCTCTAGTACT
GTAAGAGAGATAATGAAAGAAATCAGGCATTACTATCTGTTCCACAGAGT
TAGAATTCTCAGGGCAAACTACTACCATATGCAAGAATTTACTATTATCT
AGGAATAAGAAAGGTTGTGTTATAAGAAGAAACCAGAATAGATAATTAGA
ACTATAGATAGTTGAGCTTCAAACATACACAGGAATTTGCAATGACCTAG
GGGCCCGGGGTACTATATGATAGACTAGAAGAGGAACTATTGCAAGGGCA
CAAAACCATTGCCTATGACTTCTAAGATTAAGCAAACCTTAGGGAAGGCT
ACTTTTGATCCCAGTTCCCCACATTGAATTTTATCCCAATTGGTCCCTGC
CAGTCCTTTGTAGGCATTCCTCTATTTTGTGTAAAAGTCACTTATAAGAC
TATTGCTCCCTTTGAGACAAATTACATTCAGATCCACACTCCTTTGTGTC
CTGTCTGTTTCTCAGCCTCTCTTCTTGTTAAATCCTTGCCCACCTTTACT
CAGAATCCAAGATATGCCCATGGAGCAAGGACCCAAGTGAGGTTTGTCTG
TGGCAAGCTACCTTTCAGTTGACTAAAATTATATCATATATATATATATA
CACTCCAGCTCTATTCAGGTAC

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATCAAAATATATTGCATGAAGTTCTC
AAGGAATTAATTAATGTAGTTCTTAATACTGTACTGAACATATACAGACC
ACTTATATTTCAATTTCCTAAATAACATCTCCTTTTATAGCACTTACATT
ACATTAAGGGCAAAAGTAATCCAGAGATTATTTAAAATAAAGAAGGATCA
GGGGATATGGCCCAGAGGCAATGCCATGTGTGTTTTCAAACATTCACCTA
CAACACCAGTGCTTAGGATTTTGGGAGGGGCAGAGACAAGAAGATGACTG
TGGCTTCCTGAAAGCCAGCCTCACTACCAGCTCAGCAACAAACCCTGTCA
CAAGGGGATAAATTAGGGACCCCCACTAGCAGAACACACTACACCCTTCC
CTAGCCTCTGAACTTACCTGTACAGTTCTCTATGCAGACACACATAAATA
TGATTAGAATATACAAGAGGTTACTTTGCATAGCTTATATGCAAATGCAA
TGTTGTTTTAGACTTGAAACCTGAGACTTTATATCGTTAGGGTTCCAGAA
GCAAACACCCCAAATATAGAGAATAGATAAATCTTCTTACTCTGCAAAGG
AGACCTCAGTTAAGTGTGTGTGTCAGTGACACCAAAAGGTTTCCTCCTCT
ATGTTCATTTATATAGCATAGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_i08.g1 MSMg01no319_i08.g1 CHROMAT_FILE:
MSMg01no319_i08.g1 PHD_FILE: MSMg01no319_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:53 2005
         (348 letters)



>mm_chrY_1311139_1311884
          Length = 746

 Score =  298 bits (154), Expect = 4e-85
 Identities = 287/336 (85%), Gaps = 18/336 (5%)
 Strand = Plus / Minus

                                                                       
Query: 22  gttctcaaggaattaattaatgtagttc-tta-ata------ctgtactgaacatataca 73
           ||||||||||||||||| || || |||| ||| |||      ||||||||||||||||||
Sbjct: 745 gttctcaaggaattaataaaagtggttctttatataccacatctgtactgaacatataca 686

                                                                       
Query: 74  gaccacttatatttcaatttcctaaataacatctccttttatagcacttacattacatta 133
           ||||||||||||| | || |||||||||||| |||||| ||||||| || |||| |||||
Sbjct: 685 gaccacttatattgccatctcctaaataacaactccttgtatagcagtttcattgcatta 626

                                                                       
Query: 134 agggcaaaagtaatccagagattatttaaaataaagaaggatcaggggatatggcccaga 193
           |||||||||||||||||||||| ||||||||||||||| || | | ||| ||||||||| 
Sbjct: 625 agggcaaaagtaatccagagatcatttaaaataaagaaagacctgtggagatggcccagg 566

                                                                       
Query: 194 ggcaatgccatgtgtgttttcaaacattcacctacaacaccagtgcttaggattttggga 253
           || |  |||| ||| ||  ||  |||||||||||||||| |||||||||||||   ||||
Sbjct: 565 ggta--gccaagtgagtgatcccacattcacctacaacaacagtgcttaggatg--ggga 510

                                                                       
Query: 254 ggggcagagacaagaagatgactgtggcttcctgaaagccagcctcactacc-agctcag 312
           |||||||||||| ||||||||||||||||||||||||||||||| |||| || |||||||
Sbjct: 509 ggggcagagacaggaagatgactgtggcttcctgaaagccagccccact-cctagctcag 451

                                               
Query: 313 caacaaaccctg-tcacaagggga-taaattaggga 346
           ||| | ||| || ||||||||| | |||||||||||
Sbjct: 450 caagagacc-tggtcacaaggg-agtaaattaggga 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 746
Length adjustment: 9
Effective length of query: 339
Effective length of database: 737
Effective search space:   249843
Effective search space used:   249843
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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