BAC Information

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BAC

Clone NameMSMg01-326P21
ChromosomeY (Build37)
Map Location 2,890,685 - 2,891,307
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326P21.T7 (MSMg01no326_p21.b1)MSMg01-326P21.TJ (MSMg01no326_p21.g1)
ACCAG444468AG444469
length734729
length of high quality
(start - end)
670 (44 - 713)624 (76 - 699)
definitionCHROMAT_FILE: MSMg01no326_p21.b1 PHD_FILE: MSMg01no326_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:48 2005CHROMAT_FILE: MSMg01no326_p21.g1 PHD_FILE: MSMg01no326_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:48 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCCATATAGTCCCGACCAGAAAAGAAATTCCTCCTGACACATAATAA
TCAGAAGAAGAAATGCACTAAATAGAGATATACTGTTAAAAGTAGTAAGG
GAAAAAGGTCAGGTAACATATAAAGGCAGGCCTATCAGAATTACACCAGA
CTTTTCACCAGAGACTATGAAAGACAGAAAATCCTGGACAGATGTTATAC
AGATACTAAGAGAACACAAATGCCAGCCCAGGCTATTAAACCCAGCCAAA
CTCTCAATTACCACAGATGGAGAAACCAAAGTATTTCACGATAAAAAACA
AATTCACACATTAACTTTCCATGAATCCAGCCTTTCAAAGAATAATAACA
GAAAAAAAAAACCAATATAAGGACAGGAACAACGCCCTAGAAAAAGCAAG
AAAGTAATCCCTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATG
CAAACTCTAACAACAAAAATAATCGAAGCAACAATTACATTTCCTTAATA
TCTCTTCATATCAATGGATTCAGTTCCCCAATAAAAAGATATAGACTGGC
TATAAAAACAGGACCCAATAGTCTGCTGCTTACAGGAAACCCATCTCAGG
GAAAAAGACAGACACTGTCTCAGAGTGAAAGGCTAGAAAATAATTTTCCA
AGCAAATGGTCTGAAGAAATCAGCTGGAGTAACN
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTATTCTCCGTTTGCAGTTGTAAA
TGCTCGTGAGAGCAACGAACTCCCTTTTTCAGATGGAAAAGGGTTACTGA
CAGACATGTCAGGAGAAACCGGCTGCCACCCTTTGGGACATCCCAGGAGT
TCTGAGGGAGTTCTAGGGATACCTGGAGATATCCTATCAGTGTGCCAAGT
GAGAGTGTGCTCACTCGGCTGTCTGTTTCTGTTACTGGGTGCCAAGTGAG
TGTGTGCTTTCTTGGCCATCTTATTGGGGCCTGGTCTTGGTTATTGTAAT
CTTTTTTGTGTATATGTTTTTTTTTTTCCCTGTATGTGACTCTGATGATG
GGACCGACTATTATCATACCCCTTGGACTGACCCTTGATCACTCGACTGA
AATTAAGACTAACACTCACATTCTCTCTGTGGATGTCTGAAATCGATTTT
AGAGATCTTTCTGATCTACAGAATGGCCATCTTTGATGATAGTTGGCCAC
TAGAGGGCACTCTTTGTTTGGTTCTGTTTTCAGCTCTTAAAGTTGTTTTA
CAGAGGGGACCAGGGTCTCAGCCAGATTACGTGCCATACATTCTCATCTA
GAAAAATTTAGCACAGGATCCCCCCTCTCCCATCCTGTTTAAAGCCTTGG
GTTATAAAGAATAATCCAGGCTCCCCAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_p21.g1 MSMg01no326_p21.g1 CHROMAT_FILE:
MSMg01no326_p21.g1 PHD_FILE: MSMg01no326_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:48 2005
         (624 letters)



>mm_chrY_2890485_2891508
          Length = 1024

 Score =  824 bits (426), Expect = 0.0
 Identities = 576/626 (92%), Gaps = 5/626 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actattctccgtttgcagttgtaaatgctcgtgagagcaacgaactccctttttcagatg 60
           ||||||||| |||| |||||||| |||||||||||||||||||| ||||| |  ||||||
Sbjct: 201 actattctcggtttacagttgtacatgctcgtgagagcaacgaaatccctctcccagatg 260

                                                                       
Query: 61  gaaaagggttactgacagacatgtcaggagaaaccggctgccaccctttgggacatccca 120
           ||| |||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||
Sbjct: 261 gaagagggttactgacagacatgtgaggagaaaccggctgccagcctgtgggacatccca 320

                                                                       
Query: 121 ggagttctgagggagttctagggatacctggagatatcctatcagtgtgccaagtgagag 180
           |||||||||||||||||| |||||||||||||||| ||||||||| |||||||| |||||
Sbjct: 321 ggagttctgagggagttccagggatacctggagatctcctatcagggtgccaagagagag 380

                                                                       
Query: 181 tgtgctcactcggctgtctgtttctgttactgggtgccaagtgagtgtgtgctttcttgg 240
           ||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||  |
Sbjct: 381 tgtgctcactcggttgtctgtttctgttactgggtgccaagtgagtgtatgctctctcag 440

                                                                       
Query: 241 ccatcttattggggcctggtcttggttattgtaatcttttt-tgtgtatatgtttttttt 299
           ||||||||||||||||||||||||||||||||||||||||| || |||||| || |||||
Sbjct: 441 ccatcttattggggcctggtcttggttattgtaatctttttctgggtatatattgttttt 500

                                                                       
Query: 300 tttccctgtatgtgactctgatgatgggaccgactattatcataccccttggactgaccc 359
           || |||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 501 tt-ccctgtatgtaactatgatgatgggaccgactattagcatgccccttggactgaccc 559

                                                                       
Query: 360 ttgatcactcgactgaaattaagactaacactcacattctctctgtggatgtctgaaatc 419
            ||| |||| |||||||||||| ||||| |||||||||||||||||||||||||||||| 
Sbjct: 560 atgagcactggactgaaattaaaactaaaactcacattctctctgtggatgtctgaaata 619

                                                                       
Query: 420 gattttagagatctttctgatctacagaatggccatctttgatgatagttggccactaga 479
           ||||||||||| ||||||| ||||||||||||||| |||||||| |||||||||||||||
Sbjct: 620 gattttagagaactttctgctctacagaatggccagctttgatgttagttggccactaga 679

                                                                       
Query: 480 gggcactctttgtttggttctgttttcagctcttaaagttgttttacagaggggaccagg 539
           |||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 680 gggcactctt-gtttggtcctgttttcagctcttaaagttgttttacagaagggaccaag 738

                                                                       
Query: 540 gtctcagccagatt-acgtgccatacattctcatctagaaaaatttagcacaggatcccc 598
           |||||||||||||| | ||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct: 739 gtctcagccagattga-gtgccctacattctgatctaaaaaaaattagcacaggatcccc 797

                                     
Query: 599 cctctcccatcctgtttaaagccttg 624
           |||||||||||||||| |||||||||
Sbjct: 798 cctctcccatcctgttgaaagccttg 823


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)