BAC Information

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BAC

Clone NameMSMg01-329G15
ChromosomeY (Build37)
Map Location 2,432,846 - 2,433,406
singlet/doubletsinglet
Overlap geneLOC676356
Upstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581
Downstream geneLOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329G15.T7 (MSMg01no329_g15.b1)MSMg01-329G15.TJ (MSMg01no329_g15.g1)
ACCAG446256AG446257
length721754
length of high quality
(start - end)		632 (50 - 681)325 (81 - 405)
definitionCHROMAT_FILE: MSMg01no329_g15.b1 PHD_FILE: MSMg01no329_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:51 2005CHROMAT_FILE: MSMg01no329_g15.g1 PHD_FILE: MSMg01no329_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:51 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTATTTGTACCAAAGTGATAAGATCCATCTATCTCTTCAA
GGATATCTCTGTTTTGTTCAAAAAGGAGAAAAATGCAATCCAAGTTCAGG
ATCTTGATCCCTTATCCATGCATCTTAAACCCATAGGGGCTAGCCAGAAT
GTAAGGTCAGAAGTCTAAACTTCACCTATACTACAACTAACTCTGAAGAT
ATCTAGCAATCTCCAGTTCCTTTCTGGTACTTACCCACACCAAGTCTGCA
TTAAGGAATATGGTCTAGTGTGAGATAGTGCCAGCAGTTAATTGCAAAAT
CCCACTATGAGTTGAGTTGTATATATACTGAGACATCTGTAATATAGACA
CACATGCATATTCACAAATACTCACAGAAAGAGGCAAGAAGTAGAGGAGC
TGAAACTTAGAAATCCTCAAGGAAGAGAATGAAAATCTTGTAAGGCACAG
AGGTAAGAGAAAAACTGTGTCTTTCTGCACAAAATCAGGACATTCTGTCT
TCCATCACTGAATGGGAAGGCTCACTATCCCTTATCGCTATCTGATAAGG
TATAGACAGTTGATGAAGGATGAATAGTAAGTTTTCATCAAAGTTATTGA
CTTTGAATGTTATAGATTGTTCATGCTCTACTGGAAGCCAGATGTCTAAG
AGTTTATGGGAAACACAAATG

NNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCAGGATCCGCTCAA
GGACTACCTAGAATATTGGTGAAGGACAGGGAACAAAGTTGGATATTGCT
TAGATATTTGCCAAGTCATTACTTGGAGGCACTTATAATAAAACAACATT
GAAAGAAGTCACAAAGATTCAATCACTTATTAATGTAAGGACAAGTTTGA
TGCATTTTTTCCAGGATGGTTCCTGAAGACTTAGTTTCCATGAACTTTTT
GACTAGGGACTGTGTCTAAATATTTAGAACTGTCACGGAAGTCACTACTG
GGGTTTGTGTTCCAATGGCTGGTGTGAGTTTGTGTGTGTGTGTGTGGGGG
TGTNNTTNNNNNNNNNTNNNNNNCCCCCCTTTTTTTTTTTCCTTCCCTTT
CTTCTCCCTCTTCTCTCCTCGCCCGTCTTGCCCCTTCTTTCTTCCTTTCC
CCTCTTTCCTTCGCGTGCTTCCCTCCCCCTCTCCTTTCTTCTTTTCCCGT
TTTTCCCTTTCCCTTGGCTCCCTGTCTTCCTTCTCCGTCTTCTCGTTCGT
TCTTCTTTCTCCTCCCGCTTCTCCCCCTTTCCCCCCTTTTCCCTCTCCTT
TCTTCCGCTCTTCCTTCCTTTCTCCTTTTTGCTCCTTCCTGCCCTTTGTT
TCCCTCCTTCTTCCTGTCTCCCCTCTCTGCGTCGCTTGTTCCCTCTCTTT
TTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_g15.b1 MSMg01no329_g15.b1 CHROMAT_FILE:
MSMg01no329_g15.b1 PHD_FILE: MSMg01no329_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:51 2005
         (632 letters)



>mm_chrY_2432580_2433616
          Length = 1037

 Score =  400 bits (207), Expect = e-115
 Identities = 479/583 (82%), Gaps = 40/583 (6%)
 Strand = Plus / Plus

                                                                       
Query: 67  gttcaaaaaggagaaaaatgcaatccaag-ttcaggatcttgatcccttatccatgcatc 125
           |||||| ||| |||||||| |||| | || |||||||||||||||||  |||| ||||||
Sbjct: 267 gttcaagaagaagaaaaattcaatgc-agtttcaggatcttgatccc-catccctgcatc 324

                                                                       
Query: 126 ttaaacccatagg--ggctagccagaatgtaaggtcagaagtctaaacttcacctatact 183
           |||| ||||||||  ||  || ||||| || |||||||||||||||||||||||||||||
Sbjct: 325 ttaatcccatagggtgg--agtcagaaggttaggtcagaagtctaaacttcacctatact 382

                                                                       
Query: 184 acaactaactctgaagatatctagcaatctccagttcctttctggtacttacccacacca 243
           ||||| |||| ||||||| |||||| |||||| ||| || |||||||||||  |||||||
Sbjct: 383 acaaccaactgtgaagatttctagccatctcctgtttctgtctggtacttagtcacacca 442

                                                                       
Query: 244 agtctgcattaaggaata-tg---gtctagtgtgagatagtgccagcagttaattgcaaa 299
           ||||||| |||||| ||| ||   ||||||||||||||||||||||||| | ||||||||
Sbjct: 443 agtctgccttaaggcatactgcaagtctagtgtgagatagtgccagcagatgattgcaaa 502

                                                                       
Query: 300 atcccactatgagttgagttgta--tatatactgagacatctgtaatatagacacacatg 357
           | ||||||||| ||||| |||||  || | | |||||||||| ||||||||||||||| |
Sbjct: 503 aacccactatgtgttgacttgtacgtaaa-a-tgagacatctataatatagacacacacg 560

                                                                       
Query: 358 --catattcacaaatactcacagaaagaggcaagaagtagaggagctgaaacttagaaat 415
             ||||  |||| ||||||||||||||||| ||||||| ||| ||||||  ||||| || 
Sbjct: 561 tacata--cacacatactcacagaaagaggtaagaagtggagaagctgagtcttaggaac 618

                                                                       
Query: 416 cctcaaggaagagaatga----aaatcttgtaaggcacagaggtaagagaaaaactgtgt 471
           ||||||||||||||  ||    ||||||||||||||||||||||          ||||||
Sbjct: 619 cctcaaggaagaga--gagtagaaatcttgtaaggcacagaggt----------ctgtgt 666

                                                                       
Query: 472 ctttctgcacaaaatcaggacattctgtcttccatcactgaa-tgggaaggc-tcactat 529
           || ||||||||||||| ||  |||||| ||||||| | || | ||||| ||| |||||||
Sbjct: 667 ctatctgcacaaaatcgggttattctggcttccatta-tggagtgggagggcctcactat 725

                                                                       
Query: 530 cccttatcgct-atctgataaggtatagacagttgatgaaggatgaatagtaagttttca 588
           |||| ||  || |||||| || |||| |||||||| ||  ||| | | ||| ||||||||
Sbjct: 726 ccctcatt-cttatctgagaaagtatggacagttgttgggggagggagagtcagttttca 784

                                                      
Query: 589 tcaaagttattgactttgaatgttatagattgttcatgctcta 631
           |||||| ||| | ||||||| || |||| |||| |||||||||
Sbjct: 785 tcaaaggtatggcctttgaaagtgataggttgtccatgctcta 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1037
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1027
Effective search space:   638794
Effective search space used:   638794
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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