Query= MSMg01no331_c12.b1 MSMg01no331_c12.b1 CHROMAT_FILE:
MSMg01no331_c12.b1 PHD_FILE: MSMg01no331_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:01 2005
(693 letters)
>mm_chrX_53269858_53270949
Length = 1092
Score = 335 bits (173), Expect = 9e-96
Identities = 308/367 (83%), Gaps = 30/367 (8%)
Strand = Plus / Plus
Query: 79 agagaaggaaggtgtaggaagagaacattactcaaaaggtccaaattcatctaagaataa 138
||||||||||||||||| || | ||||||| ||||||||| |||||| ||||||||||||
Sbjct: 264 agagaaggaaggtgtagtaacaaaacattattcaaaaggttcaaatttatctaagaataa 323
Query: 139 attaatgcttgcaagggtctgtcaa-------gatgc-------acaaca--aaaacaag 182
||||||||||||||||||||||||| || | |||||| ||||||||
Sbjct: 324 attaatgcttgcaagggtctgtcaaaaaacacga--caacaaaaacaacaacaaaacaag 381
Query: 183 aaaaaatag---aaggtgtgtaaaaattgaaaagaatgtttgtttctgctctgtggtgtg 239
||||||||| || | | ||||| |||| || ||||||||||||||||||||||| |
Sbjct: 382 aaaaaatagataaa---gagaaaaaactgaagaggatgtttgtttctgctctgtggtgag 438
Query: 240 ttctgaccaggaataaatgaatacactaaatgaagctgcactgagaagcataaagaaggc 299
|||||||||||| |||| ||| |||| |||| |||||| |||||||||||||||||||||
Sbjct: 439 ttctgaccaggactaaacgaacacacaaaataaagctgtactgagaagcataaagaaggc 498
Query: 300 aggtaccacattctgacaagtgctaaggttgtttcaactgtattggtgtaatccttcagg 359
|||||||||| |||||| ||||||||||||||||||||||||| || || ||||||||||
Sbjct: 499 aggtaccacactctgaccagtgctaaggttgtttcaactgtataggcgttatccttcagg 558
Query: 360 ggcttcttgtcagaaacaaaccccctttatca-attcccca--acagtaaattccgtgtg 416
|||||||||||||||| |||| ||||||||| || ||| | |||||||||| ||||
Sbjct: 559 ggcttcttgtcagaaataaacatcctttatcagat---ccacgagagtaaattccatgtg 615
Query: 417 tctcatt 423
||||||
Sbjct: 616 cctcatt 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1092
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1082
Effective search space: 739006
Effective search space used: 739006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_c12.g1 MSMg01no331_c12.g1 CHROMAT_FILE:
MSMg01no331_c12.g1 PHD_FILE: MSMg01no331_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:01 2005
(616 letters)
>mm_chrY_2869413_2870428
Length = 1016
Score = 725 bits (375), Expect = 0.0
Identities = 546/651 (83%), Gaps = 90/651 (13%)
Strand = Plus / Minus
Query: 1 atcaca-ta-aaaacagacagaagaagtaggaa-taaagacatatttgggcaagatgaat 57
|||||| || |||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 945 atcacattacaaaa-agacagaagaagtaggaattaaagacatatttgggcaagatgaat 887
Query: 58 agtgaagtagagattagagcaagcagaaaggactgaggagatagctcactgcttaggccc 117
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 agtgaagtagagattagaacaagcagaaaggactgaggagatagctcactgcttaggccc 827
Query: 118 actgattgcttttgcacaggaccagggttcaatttctaacatccacatggatgttcacaa 177
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 826 actgattgcttttgcacaggaccagggttcaatttctaacacccacatggttgttcacaa 767
Query: 178 ccacctgcaattctagttctagacgatctgatgacctctttggacaacacacacacacac 237
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 766 ccacctgcaattctagttctagacgatctgatgacctctttg-----caca--------- 721
Query: 238 acacacacacacacacacacacacacacacacacacacacacacacacaca-cacacaca 296
||||||||||||||||||| ||||||||
Sbjct: 720 --------------------------------acacacacacacacacacatcacacaca 693
Query: 297 tatactcacccacagagaaaaaaaatcatttagaaaacaattacaaaaacaaccaggagt 356
||||||||||||||||||||||||||| ||||||||||||||| | |||||| ||||||
Sbjct: 692 tatactcacccacagagaaaaaaaatcctttagaaaacaattatacaaacaaaaaggagt 633
Query: 357 caagtataattttattccccttt--ttcaccagcactcagaagcaggctaaactctgtaa 414
|||||||| |||||||||||||| | ||||||||||||||||||||||||| ||||||
Sbjct: 632 caagtatagttttattcccctttaat--accagcactcagaagcaggctaaacactgtaa 575
Query: 415 gttgaatgactgcctagctgataggtgtgttttcataattttattcttctttt-ttttt- 472
||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||
Sbjct: 574 gttgaatgactgcctagctgataggtgtgttttcagaattttatttttcttttctttttc 515
Query: 473 --------------tttttttggat-------tttaggactatttcagtatttgtttaaa 511
||||||||| ||||||||||||||||||||||||||||
Sbjct: 514 ttttccttttcttttttttttgg--gggggggtttaggactatttcagtatttgtttaaa 457
Query: 512 gattctagatttttttttt---atttactttttctaatggtttaaga--ttttttcgg-c 565
|||||||| |||||||||| ||||||||||||||||| |||| | ||||||||| |
Sbjct: 456 gattctagtttttttttttttgatttactttttctaatgtttta-gtctttttttcgggc 398
Query: 566 tttttagtattttacagttttcaggttttttttttttggggggggtgcagg 616
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 397 tttttagtattttacagttttcaggttttttttt---ggggggggtgcagg 350
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
