BAC Information

Click to search

BAC

Clone NameMSMg01-337L20
ChromosomeY (Build37)
Map Location 1,434,187 - 1,434,576
singlet/doubletsinglet
Overlap genenone
Upstream geneUty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2
Downstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337L20.T7 (MSMg01no337_l20.b1)MSMg01-337L20.TJ (MSMg01no337_l20.g1)
ACCAG452440AG452441
length647777
length of high quality
(start - end)		403 (40 - 442)452 (68 - 519)
definitionCHROMAT_FILE: MSMg01no337_l20.b1 PHD_FILE: MSMg01no337_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:12 2005CHROMAT_FILE: MSMg01no337_l20.g1 PHD_FILE: MSMg01no337_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCTATAATTGCGGCGCTATACGACTCCTATATGGAGAGGATCCGCG
GAATTCTTATTTTGTCACTTCACACAATATCTAGTGTATAATTTTCTCTA
TGCAAGTGAAACAAAGTACAAATGGAAAAAATACAAATATNTTGATAGAA
ATAGTCCTACATATTATTTAACTTCAACAAAAGTTTTGCTTAAGTTAAAC
TACTTTCAAGAAGAAAATCTATTATTAAAAATTTTAATGTTTACTTTAAA
AGCACAGGGCAATATAGGGATTATAAAATTATATCAACTGTATGAATTAT
TAGACAAAATTGTTATGTTTGCATGTATTCTTGATTTTCTGTTATAAAAA
TATTTTCTTTGAGAAATTCTTAAAATATATTTCAATCATGTTCATCCCCC
TCTAATTACACCCAGACCCTGTCCTATGTCTCCCTACTAATGTCATGTCC
TTCTTTTTCCCCTTATAATCCACCAGTTTCATTAAAGCTACTCCGTATAC
TAATTGGTTGTGGTACAATCTGCTAAAGCACGGTCAACAATCTGGATTCA
TGTCCATAAAGAAATGATTCTCCTCTAACAGCATCCACTGGCACTGTTCA
TCTGGAGAATTAAGGGTCAAAGCCCTTCCCCATTCTAACTGAAAGGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTTTCAGGTCATCAGGCCATTTCGGTAGGGAT
TTTATTTCGGCCTTTTATGAGGCCATATGAGGAGGTAAAGCCTAGATGCC
GAATGTTTCTGAGTGTAACTAGGGAAGTAACCAACCTGATAGGGGTTCTA
TTATGTAAGCTGAGCTAGGGTGATGTCACAGAGCACTGGCCGGAGGTTGT
GCACCTATTCCACTTGCGGGCGCTAGAATCCCTTGAAGTTGGGTTAACTA
TCTTTACAGTGGTGTGTGAAAGCCAGGTCAACAGGCTTTTGGTGCCTGGC
CTGTTTCAGAAGACAGAATCTGGACGACTAGGATATATTTTTTGGGTAAG
TACATTTATGAAATAACTGGGACCCTCTTAGCTCCAGAAAGCTAAAAGTA
TTCTCTCAGTAACTTTACATTTTAATTTCTCCCATGTTTGGGAGTTAGGG
GGATGGATGGTTTAGGCTAGNTGATCCCCTGAGTTTATTATCCTTTCTAA
CCCTATCTAATTCTGATTTCCAATCATTTGTACAGGTTATTCTTTTTCCG
TGGGCATTTTATAAATATTAAATCCAACTTGGCTGATTATTGTTTGGACT
GTTTGAAGTCTTGTTCAAACCCAAAATAGCATGGTTTTTTTACAACATTT
TGTGGCTTGTTTTTACAGGCTATTAATAAACATTCCTCTGTGCTTTTTTC
CTTGTCTTTATTTTTTGCCTAACCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_l20.b1 MSMg01no337_l20.b1 CHROMAT_FILE:
MSMg01no337_l20.b1 PHD_FILE: MSMg01no337_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:12 2005
         (403 letters)



>mm_chrY_1433976_1434776
          Length = 801

 Score =  743 bits (384), Expect = 0.0
 Identities = 390/392 (99%), Gaps = 2/392 (0%)
 Strand = Plus / Minus

                                                                       
Query: 12  gaattcttattttgtcacttcacacaatatctagtgtataattttctctatgcaagtgaa 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gaattcttattttgtcacttcacacaatatctagtgtataattttctctatgcaagtgaa 542

                                                                       
Query: 72  acaaagtacaaatggaaaaaatacaaatatnttgatagaaatagtcctacatattattta 131
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 541 acaaagtacaaat-gaaaaaatacaaatat-ttgatagaaatagtcctacatattattta 484

                                                                       
Query: 132 acttcaacaaaagttttgcttaagttaaactactttcaagaagaaaatctattattaaaa 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 acttcaacaaaagttttgcttaagttaaactactttcaagaagaaaatctattattaaaa 424

                                                                       
Query: 192 attttaatgtttactttaaaagcacagggcaatatagggattataaaattatatcaactg 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 attttaatgtttactttaaaagcacagggcaatatagggattataaaattatatcaactg 364

                                                                       
Query: 252 tatgaattattagacaaaattgttatgtttgcatgtattcttgattttctgttataaaaa 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tatgaattattagacaaaattgttatgtttgcatgtattcttgattttctgttataaaaa 304

                                                                       
Query: 312 tattttctttgagaaattcttaaaatatatttcaatcatgttcatccccctctaattaca 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tattttctttgagaaattcttaaaatatatttcaatcatgttcatccccctctaattaca 244

                                           
Query: 372 cccagaccctgtcctatgtctccctactaatg 403
           ||||||||||||||||||||||||||||||||
Sbjct: 243 cccagaccctgtcctatgtctccctactaatg 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 801
Length adjustment: 9
Effective length of query: 394
Effective length of database: 792
Effective search space:   312048
Effective search space used:   312048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |