Query= MSMg01no343_o10.b1 MSMg01no343_o10.b1 CHROMAT_FILE:
MSMg01no343_o10.b1 PHD_FILE: MSMg01no343_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:54 2005
(321 letters)
>mm_chrY_1769136_1769855
Length = 720
Score = 275 bits (142), Expect = 3e-78
Identities = 246/288 (85%), Gaps = 23/288 (7%)
Strand = Plus / Minus
Query: 15 aaatctccctgcctctgcctcccaac-gtctgggattaaggcatgtgccaccagtgactg 73
|||||||||||||| ||||||||||| | ||||| |||||||||||||||||| ||||||
Sbjct: 478 aaatctccctgcctttgcctcccaactg-ctggggttaaggcatgtgccaccactgactg 420
Query: 74 acccaacttaaaacttgagataggttctctctgaatatgcagctcaccaatgccacta-c 132
||||||||||||||||||| ||| ||||||||||| || | |||||||||||||||| |
Sbjct: 419 tcccaacttaaaacttgagacaggatctctctgaatctggacctcaccaatgccactagc 360
Query: 133 ctcagctagccagcaagctgtctccacctactcagcactgg--ttggcagcctgca-ttt 189
|| ||||||||||||||||||||||||||||||||||||| | ||||| | || |||
Sbjct: 359 ct-ggctagccagcaagctgtctccacctactcagcactgggct--gcagcatacatttt 303
Query: 190 tagaagtggattctaggcccccacttt-------tat--tttcaaggaaaacattttact 240
|| |||||||||||||||||||| ||| ||| ||| ||||||| || |||||
Sbjct: 302 ta-aagtggattctaggcccccattttaattccatataatttgaaggaaagcactttacc 244
Query: 241 aaaacagccatctctctag--cctctcttcaaggtttgttctgttgct 286
||||||||||||||||||| ||||| | |||||||||||||||||
Sbjct: 243 aaaacagccatctctctagcacctctgt--gaggtttgttctgttgct 198
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space: 221832
Effective search space used: 221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no343_o10.g1 MSMg01no343_o10.g1 CHROMAT_FILE:
MSMg01no343_o10.g1 PHD_FILE: MSMg01no343_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:54 2005
(430 letters)
>mm_chrX_120145708_120146537
Length = 830
Score = 395 bits (204), Expect = e-114
Identities = 302/342 (88%), Gaps = 23/342 (6%)
Strand = Plus / Minus
Query: 97 aaaaaaaaaaaaaaa--caaaaaaaaacaaa-aa--aaaaaaaccaa-aaacaaacaaa- 149
||||||||||||||| |||||| || |||| || ||| |||| || ||||||| |||
Sbjct: 827 aaaaaaaaaaaaaaatccaaaaacaagcaaacaagcaaacaaacaaacaaacaaaaaaac 768
Query: 150 caaa-caaaaaaccaccccccc---aaaatactaaaaaacaaaaatcataaaaaaaaact 205
|||| |||||||||| |||||| ||||||||||| ||||||||| |||||||||
Sbjct: 767 caaaccaaaaaaccaaccccccaaaaaaatactaaa----aaaaatcat--aaaaaaact 714
Query: 206 ttaaagcctaaaaaaaacccaaaccctgaaaaaccctaatatcctaaaaaaaaaagaaaa 265
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 713 ttaaagcctaaaaaaaacccaaaccctgaaaaaccctaatatcctaaaaaaa----aaaa 658
Query: 266 aaaaaaaagaaaaaacagaaaaaaaccctacaaataccctaaaatactgaaaaccaaaaa 325
|||||||| ||||||||||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct: 657 aaaaaaaa-aaaaaacagaaaaaaacactaaaaatacactaaaatactgaaaaccaaaaa 599
Query: 326 cacctctaaaacactcttcttaataccctaaaaaactcttaaaaaaaacactaaaattct 385
||||||||||||||||||||||| |||||| ||||||||||| || ||||||||||||||
Sbjct: 598 cacctctaaaacactcttcttaaaaccctataaaactcttaagaagaacactaaaattct 539
Query: 386 aaaaaattaagaatataaaagaatgtaaaaatgaccccaaaa 427
|||||||||| |||||| ||||| |||||| |||||| ||||
Sbjct: 538 aaaaaattaaaaatatacaagaacgtaaaagtgaccc-aaaa 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 120
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space: 345641
Effective search space used: 345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
