BAC Information

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BAC

Clone NameMSMg01-349K09
ChromosomeY (Build37)
Map Location 2,603,659 - 2,603,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236
Downstream geneEG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349K09.T7 (MSMg01no349_k09.b1)MSMg01-349K09.TJ (MSMg01no349_k09.g1)
ACCAG461453AG461454
length738740
length of high quality
(start - end)		613 (44 - 656)575 (79 - 653)
definitionCHROMAT_FILE: MSMg01no349_k09.b1 PHD_FILE: MSMg01no349_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:19 2005CHROMAT_FILE: MSMg01no349_k09.g1 PHD_FILE: MSMg01no349_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCTCTATCTGCCTTTGATTCCCATATCCTGAGATTAAAGTCCTTTC
TAAGCAGATCTCAACACCTTTTTTTTAAATTTTCTGTCTCACAGTTCTTG
AAGAATAGATGGGGGAGCAGAGAAAATTTCACCCCAAAAAATTGGCAATT
AGTGGCTGCAGGTGTGAGGGCCAGTTTTCTTCATAGATTTGGCTCCTCAG
AGGCTGCCCATGTTCCAGTGGATGTGTTTCCCTAACCCCACATATGTAGT
CAGCAACTAAATTCACTCAGTGGTCTTTATTAAAATGTGCATGGAATTAA
AGCTAAAAGTGATACAGGAGAAATGGAGAGCAATTCAAGGAGGAGAAGAT
GGGGATGGATTTACTCAAACTCATTATGTTTATGTACAAAGTTCTTCAGC
AAAACATTTAAAACTAAGTAAGTAAGTAAATAAGTAAATAAGTAAGTAAT
AAGCAAGCAAGCAAGTAAGTAAAAAATAAATATATGAGTAAATAGACAAA
TATATTTTTATGCAATCTCACGTGCAATAGGCATGAAAGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTGTGTGTGTGTGCAGACAT
GCATACAGGAGTGTTTGCAGGCATGTACCAGTTTGATGATTAAATATCCT
TGGCCCATGGGAAGTGGTCCTATTACCATATGTGGTCT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAATGTTACCTGTAACA
ACCAGAGTTACCTCTAGTATTATAAGAGAGATTGTGACAGCCATTGCTAT
ATACTACATAGAGTTAGAAATCTCAGGACAACTTTAGGAAAGTATGTTTA
GAATATTTGTTATACTTATGCATGGCAGGCTACATTAGTTGTTAGTAGAA
AGATTCCCCCATACAATCCCTCTCATATACAGGAATTTACAATGGTTTAG
GAAATAACTTGTGCTGTGGTTTGAGGGGTAACAACAGTTTTGAATTATTC
ATGAGAAGATTAGCTAGAAAGAAACTCCCTAATTAGAACCATGGCTTGAG
TGTGAAATCCATTTGCATGGTGTGATCATAAAGTGTTCAAACCTAGCTTC
AAAGAATATAGCTGACTTTAGAGAAGAATTCATTTCAGTTATTTTATTGC
TCAGTCCCTGCCAGTCATTATGTTTTTATTGCTCTATTTTGGACATGAGT
CTTTAAGAATTCAGTAACCTCATTTACCTGGCTGATTTGAAAACCAACTT
CCCTATTTGTTTCTATATTAATAATCTGATGATTTCTTTGAGAAATTACA
TTCAGATACAGCAACCTCTGTTTGTATCTGATTGACACTTAAATGTCAGC
TTCCTGCCCACCTATACCAGGACAACGATTTCTCCCAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_k09.b1 MSMg01no349_k09.b1 CHROMAT_FILE:
MSMg01no349_k09.b1 PHD_FILE: MSMg01no349_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:19 2005
         (613 letters)



>mm_chrY_2603455_2604468
          Length = 1014

 Score =  137 bits (71), Expect = 2e-36
 Identities = 95/105 (90%), Gaps = 5/105 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctctatctgcctttgattcccatatcctgagattaaagtcctttctaagcag 64
           ||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaattcatctctaactggttttgattcccatatcctgagattaaagtcctttctaagcag 248

                                                        
Query: 65  atctcaacaccttttt---tttaaattttctgtctcacagttctt 106
           | |||||||  |||||   |||||||||||||||||||| |||||
Sbjct: 247 acctcaaca--tttttgtttttaaattttctgtctcacaattctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1014
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1004
Effective search space:   605412
Effective search space used:   605412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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