BAC Information

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BAC

Clone NameMSMg01-361I19
ChromosomeY (Build37)
Map Location 2,870,358 - 2,870,918
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361I19.T7 (MSMg01no361_i19.b1)MSMg01-361I19.TJ (MSMg01no361_i19.g1)
ACCAG470451AG470452
length753757
length of high quality
(start - end)		564 (49 - 612)565 (75 - 639)
definitionCHROMAT_FILE: MSMg01no361_i19.b1 PHD_FILE: MSMg01no361_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:37 2005CHROMAT_FILE: MSMg01no361_i19.g1 PHD_FILE: MSMg01no361_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:37 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCTTTGCTTTTCTCTTGTTTCTCCAATTACTTCAGCAAGAT
TCTGCATTGCCTTTTGTTTTGGAAGATTCTCAAGGAATCCTAAATCCAGA
CTTTAGGGCAGTTATTTAAAATTCTTACTGGTGGTTCTGACAATGGTTTC
CTCTTTTTTTTTTTTAATTAGGTATTTTTTCATTTACATTTCCAATACTA
TCCCAAAAGTCCCCCAATACCCACCTCAACCATACCCCCCCCACCACCAT
ATCTTGCCCCTGGCATACCCCTGAACTAAGGCATATAATGTTTGCAAGAC
TGATGGGCCTCTCTTTCCAATGATGGCCAACTAGTCCATCTTCTGATACA
ACTGCAGCTAGAAACATGAGCTCTAATAAGTTGCTAGAAAAATGAGCTCT
GGGGGGTTTCTTTAGTTCATATTGTTGTTCCACTTATGGGATTGCAGACC
CCTTAAGCTCCTTGGGTACCTTCTCTACCTCCTCCATTTCTGTCCCTGTG
ATTCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCA
TGGCATAGCCTCACAAGAGACAGCTAAATCTGGGTCCTTCCAGCAAAATC
TTGCCAGTGTATGCAATGGTGTCAGTGTTTGGAGGCTGATTATGGGATGG
ATCCCTAGGAATGGCAGTCTCTAGATGGTCCATCCTTTTGTCTCAGCTCC
AAA

CCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTGGGAGGA
AAAAGCAGCTCATTATGAGAGAAAAGGGTACCAGCCAGATAAAGTGCTAG
CTAATCAGTTAAGAAAAAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTGCT
ACTTGGCCTCCGGGCAGTCGGCTTCAAGGTGCACTTCCGCCCTATGCGGA
GCCCCCATCCTGTGTAGTGCGTCAGCCCTGCGCAGAGAGACAATGCGCAG
AGAGGCAATGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAATA
CAACAGACATTTCCGGTCTTTGAAGGAGCCGAGCATGGGCGTGTCCACGC
TCCGGTAGAATATGTGCAGATTAAAGAGCTTGCCGAGTCGGTCCGTAAAT
ATGGAACCAATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTTGCCGAC
ATGGCAGTAACTCCTGCCGACTGGCAAATGATTGTAAAAGCCGCTCTCCC
TAGTATGGGCAAATATATGAAATGGAGAGCTCTATGGCAAGAGGCTGCAC
AAGCGCAGGCCCGAGCAAACGCAGCTACTTTGACTCCAGAGCAGAGAGAT
TGGACTTTTGACTTGTTAAACGGGTCAGGGAGCTTATTCTACTGATCAAC
CAACTATCATTGGGGAGCTTATGCCCAATTTTCCTCCACGGCTATTAGTG
CCTGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_i19.b1 MSMg01no361_i19.b1 CHROMAT_FILE:
MSMg01no361_i19.b1 PHD_FILE: MSMg01no361_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:37 2005
         (564 letters)



>mm_chrY_2870154_2871117
          Length = 964

 Score =  849 bits (439), Expect = 0.0
 Identities = 531/563 (94%), Gaps = 5/563 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcctttgcttttctcttgtttctccaattacttcagcaagattctgcattgcct 64
           |||||||  ||||||||||||||||||||||||||||  || |||||||||||||| |||
Sbjct: 205 gaattcttgtttgcttttctcttgtttctccaattacagcaccaagattctgcatttcct 264

                                                                       
Query: 65  tttgttttggaagattctcaaggaatcctaaatccagactttagggcagttatttaaaat 124
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgttttggaagattctcgatgaatcctaaatccagactttagggcagttatttaaaat 324

                                                                       
Query: 125 tcttactggtggttctgacaatggtttcctcttttttttttttaattaggtattttttca 184
           |||| ||||||||||||||||||||||||||   |||||||| |||||||||||||||||
Sbjct: 325 tcttgctggtggttctgacaatggtttcctc--attttttttaaattaggtattttttca 382

                                                                       
Query: 185 tttacatttccaatactatcccaaaagtcccccaatacccacctcaaccatacccc--cc 242
           ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||  ||
Sbjct: 383 tttacatttccaatactatcccaaaagtccccccatacccacctcaaccacacccctacc 442

                                                                       
Query: 243 -ccaccaccatatcttgcccctggcatacccctgaactaaggcatataatgtttgcaaga 301
            ||||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 443 accaccaccacatcttgtccctggcatacccctgaaataaggcatataaagtttgcaaga 502

                                                                       
Query: 302 ctgatgggcctctctttccaatgatggccaactagtccatcttctgatacaactgcagct 361
           |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 503 ctgatggggctctctttccaatgatgaccaactagtccatcttctgatacaactgcagct 562

                                                                       
Query: 362 agaaacatgagctctaataagttgctagaaaaatgagctctggggggtttctttagttca 421
           ||||||||||||||| ||| |  |||||||||||||| ||||| ||||||||||||||||
Sbjct: 563 agaaacatgagctctgatatgcagctagaaaaatgagttctggagggtttctttagttca 622

                                                                       
Query: 422 tattgttgttccacttatgggattgcagaccccttaagctccttgggtaccttctctacc 481
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 623 tattgttgttccacttatgggattgcagacccctttagctccttgggtaccttctctacc 682

                                                                       
Query: 482 tcctccatttctgtccctgtgattcatccaatagctgactgtgagcatccacttctgtgt 541
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tcctccatttcggtccctgtgattcatccaatagctgactgtgagcatccacttctgtgt 742

                                  
Query: 542 ttgctaggccatggcatagcctc 564
           |||||||||||||||||||||||
Sbjct: 743 ttgctaggccatggcatagcctc 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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