BAC Information

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BAC

Clone NameMSMg01-378G01
ChromosomeY (Build37)
Map Location 928,363 - 928,822
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y
Downstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378G01.T7 (MSMg01no378_g01.b1)MSMg01-378G01.TJ (MSMg01no378_g01.g1)
ACCAG483238AG483239
length747749
length of high quality
(start - end)		474 (39 - 512)497 (81 - 577)
definitionCHROMAT_FILE: MSMg01no378_g01.b1 PHD_FILE: MSMg01no378_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:51 2005CHROMAT_FILE: MSMg01no378_g01.g1 PHD_FILE: MSMg01no378_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:51 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GGGAGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGATCC
GCGGAATTCTCCATACATTTCAGGTGAGGATGTTTTCATAAACAGACAGT
GTCCTGGAGACAACAAGGTTAGCAGTATAAGCTCATGTTTTGCCCTTTTA
TGAAACCATACTGTCTTATACATGTCTAAAAGATATTGACTTTGTAACCT
CAATACTGCTGCCCTTAACCTCATTGGAGACTGGCAGTCAGTAGATTTTT
TTTTAATGTGCTTGCTATACAAAACTTTTGTTTGAGATTTTATAGTTCCT
TTTTTTCTGTTCTAAATATGCACTACTCTGTATCACCAGAAAATGTTGTC
ACAGGAAAATAGAGAAGCATTTAATAACCCCTCCCCCACCCCCATGATCT
TTGTAACCCAACTTCCTTATATGATTTCAATAAGACTGGGCCTGAGACAA
GTCTGCAGAGCACCCTGACTCCTGAGTTCATGGGCTCTCATGGCAAAGAA
GGAGGAGGAGGAGGAGGATGAGGAGGAGTAGGATTTCCTCTTTCTCTTCA
CTTTCATCCTCGACTATTTTTTTTTCTCGCTCTCAAGTACCTACTGATTA
TCCTATCTTTTACACCCCACCCTATTCATTTCTATCTCCCTCCTCCTGCT
TTAACTCACTATATATCCTCCATATCCCCTTCCCTCTTTCCCCCCTCACC
TTCCCCTCAAATCTTTTTTCTCTTGTGTTCTTCTTATTTTATTTCTT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTTCAGTAGATAGACAGG
GCTCCAAGTGGAGGAATGGGGTTACCAACCCACTGTCAAAATTTGTGACT
CAGAATTGTTCCTATCTAAAAGAACTGCACTGACGAAATGGAGAAGAGAC
TGGAGGAAAGGTGCTCCAGTGAATGGCCCAACTTGGGAGCCATGTCATAG
AGAACAGGGTGGACATCAAGGTTTGACATTTATGCCTTTACTGGTGCTTT
GATGTGCTTGCAGACAGGAGCCTGCCATAGCATGGCTGCCCTCTGAAAGG
CCCTACGGGTAGCTGACTGAGGCATATGCTGATGCTTACACCCATCCACT
AGCCTGAGGTAGGGGTCCCTATGGAGAAATTAGGAGGAGGATTGAAGGAG
CTGAAGAAGATGAGAAGAACAGAAGTCTCAACTAACTCAACCTCATGGAG
TTCTCAGAGACTGAGCCACTAACCAGGGAACATACATAGGCTAGTCTGAG
GTCCCTGGCACATATATAGTAGAGGACTGTCTTGACTGTCCTCAGTGGAG
AGGATGCTCTTAATCCTGCAGAGGCTTGAGGTTCTCGGGTAGGTGATCCG
GGCTGGTGTAAACACCCTATAAGGATGATGACCAGCGGCTCTCGTTTCTC
CTTTTTCATGTCCACTCTTACCTCCCTTCCTTCCCTTCTTTCCCCGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_g01.b1 MSMg01no378_g01.b1 CHROMAT_FILE:
MSMg01no378_g01.b1 PHD_FILE: MSMg01no378_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:51 2005
         (474 letters)



>mm_chrY_928149_929022
          Length = 874

 Score =  870 bits (450), Expect = 0.0
 Identities = 458/462 (99%), Gaps = 4/462 (0%)
 Strand = Plus / Minus

                                                                       
Query: 15  ggaattctccataca--tttcaggtgaggatgttttcataaacagacagtgtcctggaga 72
           |||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ggaattctccatacaggtt--aggtgaggatgttttcataaacagacagtgtcctggaga 617

                                                                       
Query: 73  caacaaggttagcagtataagctcatgttttgcccttttatgaaaccatactgtcttata 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 caacaaggttagcagtataagctcatgttttgcccttttatgaaaccatactgtcttata 557

                                                                       
Query: 133 catgtctaaaagatattgactttgtaacctcaatactgctgcccttaacctcattggaga 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 catgtctaaaagatattgactttgtaacctcaatactgctgcccttaacctcattggaga 497

                                                                       
Query: 193 ctggcagtcagtagatttttttttaatgtgcttgctatacaaaacttttgtttgagattt 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ctggcagtcagtagatttttttttaatgtgcttgctatacaaaacttttgtttgagattt 437

                                                                       
Query: 253 tatagttcctttttttctgttctaaatatgcactactctgtatcaccagaaaatgttgtc 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tatagttcctttttttctgttctaaatatgcactactctgtatcaccagaaaatgttgtc 377

                                                                       
Query: 313 acaggaaaatagagaagcatttaataacccctcccccacccccatgatctttgtaaccca 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 acaggaaaatagagaagcatttaataacccctcccccacccccatgatctttgtaaccca 317

                                                                       
Query: 373 acttccttatatgatttcaataagactgggcctgagacaagtctgcagagcaccctgact 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 acttccttatatgatttcaataagactgggcctgagacaagtctgcagagcaccctgact 257

                                                     
Query: 433 cctgagttcatgggctctcatggcaaagaaggaggaggagga 474
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cctgagttcatgggctctcatggcaaagaaggaggaggagga 215


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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