BAC Information

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BAC

Clone NameMSMg01-381J07
ChromosomeY (Build37)
Map Location 932,808 - 933,353
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y
Downstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381J07.T7 (MSMg01no381_j07.b1)MSMg01-381J07.TJ (MSMg01no381_j07.g1)
ACCAG485688AG485689
length707756
length of high quality
(start - end)		550 (39 - 588)460 (73 - 532)
definitionCHROMAT_FILE: MSMg01no381_j07.b1 PHD_FILE: MSMg01no381_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:02 2005CHROMAT_FILE: MSMg01no381_j07.g1 PHD_FILE: MSMg01no381_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:02 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCC
AAAGATCCCTTGGTGACAACTGGTGACATCACAGGGGATGTGCTCAAAGC
TCTCCAGGATTCAATAGAATGTCCAGAGGAGGGACTCATGATATGAGGAA
CAGCTTTTGTCTACCTTCTAATGCTCTCTCAGTATTGACCTCAAACTGAG
TTTCCTATTCTAGGAAACTCTTGGGACATAGCCATTGAGTACCTCCTCAT
TCCAAAGTCATAGATTGCCCTAGGCACTGGACAAACCTTAGCTCCTCCAA
CAGGAAACTGAGTCTTTAATTTCCAAACCTTTTCCAGAATGGTCTCATTT
CTTCCTCAATATCCCTCTATTCATCTACATAAACAAGTACAGTACTGACA
AACAATGAAAGGCAGAAATGGTCATTAGACAAATGTTGGGGCCCCTGACA
GGCTGTTACTAAAAGAAGCCAATTTTCTTGATCTCTTTGAGGTTCTATAA
TGCTTCAGTGTTCTCATTCTTTAAACACTATAGGTCTATTATAAATAGGA
GTTGACCTGTGGTAGGACCTAATCCCAGGAGGATAGCATATCATGAACCC
CGAACTGCCGGATCATTTCAATCCAGGCTGTATCTTCACTGACCCCATTC
CTGGAGGGATCATATTCTAAGCCCTATGTATTGGGGAAATAAGAAGGTTT
GACAACC

ATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCA
GTCTGGCGGTTCCTCAGAAAACTGTTATATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CAGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTNAAAAGAATGAATTT
ATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGAAAACATTCCCAAGGAACTCACACAATATGTACTCCCTGATAAGGGGA
TATTAGCCCCAAACCTATGATACCCCAGAATAAGATACAATTTCTCAAAC
CTTGAACTCCCAAAAATGAAAACGAATGGGGAAACTTGCCCCCCCTTACA
AGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_j07.b1 MSMg01no381_j07.b1 CHROMAT_FILE:
MSMg01no381_j07.b1 PHD_FILE: MSMg01no381_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:02 2005
         (550 letters)



>mm_chrY_932604_933553
          Length = 950

 Score = 1033 bits (534), Expect = 0.0
 Identities = 543/546 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccaaagatcccttggtgacaactggtgacatcacaggggatgtgctcaaagctc 64
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccaaagagcagttggtgacaactggtgacatcacaggggatgtgctcaaagctc 264

                                                                       
Query: 65  tccaggattcaatagaatgtccagaggagggactcatgatatgaggaacagcttttgtct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccaggattcaatagaatgtccagaggagggactcatgatatgaggaacagcttttgtct 324

                                                                       
Query: 125 accttctaatgctctctcagtattgacctcaaactgagtttcctattctaggaaactctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accttctaatgctctctcagtattgacctcaaactgagtttcctattctaggaaactctt 384

                                                                       
Query: 185 gggacatagccattgagtacctcctcattccaaagtcatagattgccctaggcactggac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggacatagccattgagtacctcctcattccaaagtcatagattgccctaggcactggac 444

                                                                       
Query: 245 aaaccttagctcctccaacaggaaactgagtctttaatttccaaaccttttccagaatgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaccttagctcctccaacaggaaactgagtctttaatttccaaaccttttccagaatgg 504

                                                                       
Query: 305 tctcatttcttcctcaatatccctctattcatctacataaacaagtacagtactgacaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctcatttcttcctcaatatccctctattcatctacataaacaagtacagtactgacaaa 564

                                                                       
Query: 365 caatgaaaggcagaaatggtcattagacaaatgttggggcccctgacaggctgttactaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caatgaaaggcagaaatggtcattagacaaatgttggggcccctgacaggctgttactaa 624

                                                                       
Query: 425 aagaagccaattttcttgatctctttgaggttctataatgcttcagtgttctcattcttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagaagccaattttcttgatctctttgaggttctataatgcttcagtgttctcattcttt 684

                                                                       
Query: 485 aaacactataggtctattataaataggagttgacctgtggtaggacctaatcccaggagg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaacactataggtctattataaataggagttgacctgtggtaggacctaatcccaggagg 744

                 
Query: 545 atagca 550
           ||||||
Sbjct: 745 atagca 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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