BAC Information

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BAC

Clone NameMSMg01-382A11
ChromosomeY (Build37)
Map Location 1,655,248 - 1,655,830
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143
Downstream geneLOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382A11.T7 (MSMg01no382_a11.b1)MSMg01-382A11.TJ (MSMg01no382_a11.g1)
ACCAG486029AG486030
length748761
length of high quality
(start - end)		604 (29 - 632)582 (57 - 638)
definitionCHROMAT_FILE: MSMg01no382_a11.b1 PHD_FILE: MSMg01no382_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:38 2005CHROMAT_FILE: MSMg01no382_a11.g1 PHD_FILE: MSMg01no382_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:38 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CGCTATACGACTCACTATATTTAGAGGATCCGCGGAATTCTCTGTATAGT
TACGGATACATTGTCTCATGGGAAGGGGGAGTGTGGATTCCCTGTGGTTA
CTAAAATAGAAGAAGTTGTAAACAGCCTATGGAAATGTGGCAAGTCCAAG
TGTATGCTGTGCATGAGCTGCCAGTGTTCAGAAATGCTGAGCCATCACTT
CAGATTCAATAAGATATTTAAAGAAGAAAACCAGAAGAAAAAACTTAAGG
GGACTGTTGTGAATTTTAATGAGACATTTTTAATTATTTTTACTGATTTA
TATAACATATGCCAAATGGTGTGTCCAGTCTTTTAAACATGGCTTGATTG
TTCCTTTCAAAGTATCTTGATTATTATTCCCAGAGACAGGATTTACAATC
TGTACATTCAAATTCTTATTTGTACTTCCCAATTCCTCCCTGTTTCTTTT
GTTTTTCTTCTCTGGAACTGGATATTTCTATATAGTCCTAGATTTCTGTG
CTTTCCTGTGCAGATCAGCAGAGAATTCATCTCTACCTGGTTTTGATTCC
CATATCCTGAGATTAAAGTCCTTTCTAAGCAGATCTCAACACCTTTTTTT
AAAATTTTCTGTCTCACAGTTCTTGAAGAATAGATGGGGGAGCAGAGAAA
AATTCACCCCAAAAAATTGGCAATTAGTGGCTGCAGGTGTGAGGGCCAGT
TTTCTTCATAGATTTGGCTCCTCAGAGGCTGCCCATGTTCCAGTGGAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATATATATGACAGAGGCAACAGCATTGTGTCTGGCGTAAACGGG
CAAGATCTTCAGTCCCAGGCAATGGGCAAGTATGATATTTGAAGAGAATG
GAAGCCACTTAGACAGTGTGATCTAGCACAACAGGTCTACAGCCAGGTAG
AAGACAATACCTCTGAAGAGTCTGAGCATGACATCACTCAAGAAGAAGAG
TAGGAGGAAGCCTTCTTCCCAGGCCCTGGGGAATATTGTTGGCTGCAGAA
TTTCTCACGGGTGGAAGGAAGGTAATGAGCCTGTCAACCATTGGAAGGCC
ATCATTCTAGGTCAACTGCCAACAAACCCTTCTCTTTATTTGGTGAAGTA
TGACGGAATTGACAGTGTCTACGGACAGGAGCTCCACAGCGATGAGAGGA
TTTTAAATCTTAAGGTCTTGCCTCACAAAGTAGTTTTTCTTCAGGTGAGG
GATGTCCACCTCGCCAGCGCCCTGGTTTGCAGAGAGGTACAACACAAATT
TGAGGGGAAAGATGGCTCTGAGGACAACTGGAGTGGGATGGTGCTAGCCC
AGGTGCCATTCTTACAGGACTATTTTTACATTTCCTACAAGAAGGATCCG
GTCCTCTACGTCTATCAGCTCCTGGATGACTACNAGGAAGGTAACCTCCC
CATCATTTCAGAGACCCCTCTGGCTGAGGCGAGATCAGGTGATGACCATG
ACTTCTTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_a11.b1 MSMg01no382_a11.b1 CHROMAT_FILE:
MSMg01no382_a11.b1 PHD_FILE: MSMg01no382_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:38 2005
         (604 letters)



>mm_chrY_1655042_1656041
          Length = 1000

 Score =  485 bits (251), Expect = e-141
 Identities = 510/601 (84%), Gaps = 32/601 (5%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctctgtatagttacggatacattgtctcatgggaagggggagtgtgg-attccct 65
           ||||||||||||||| || | |||||||||| ||||||||| |||||||||| | |||||
Sbjct: 789 gaattctctgtataggtatgaatacattgtcccatgggaagagggagtgtggca-tccct 731

                                                                       
Query: 66  gtggttactaaaatagaagaagttgtaaacagcctatggaa-atgtggcaagtccaagtg 124
           ||||| ||| || |||| | ||||||||| |||| |||||| | ||||||||||||||||
Sbjct: 730 gtggtcactgaagtagacggagttgtaaagagccaatggaaga-gtggcaagtccaagtg 672

                                                                       
Query: 125 tatgctgtgcatgagctgccagtgttcagaaa-tgctgagccatcacttcagattcaata 183
           ||||||||| ||| |||| | |||| |||||| | |||| | ||| || |||||||||||
Sbjct: 671 tatgctgtgtatgtgctggcggtgtccagaaagt-ctgatcaatccctccagattcaata 613

                                                                       
Query: 184 agatatttaaagaa-gaaaaccagaagaaaaaacttaaggggactgttgtgaattttaat 242
           ||| ||||||| || |||||||| |||| ||||| |||||||| | || | | |||||||
Sbjct: 612 agacatttaaa-aaggaaaaccacaagagaaaacataaggggaatattttcatttttaat 554

                                                                       
Query: 243 gagacatttttaattatttttactgatttatataacatatgccaaatggtgtgtccag-t 301
           || |||||||||||| ||| |||||||||||||||||| ||||| || ||||||| || |
Sbjct: 553 gacacatttttaattgtttctactgatttatataacatttgccatattgtgtgtctagtt 494

                                                                       
Query: 302 cttttaaacatggcttgattgttcctttcaaa-gtatcttgattattattcccagagaca 360
           ||||||  ||||| || ||||||||||| ||| || ||||||||||||||| ||||||||
Sbjct: 493 cttttactcatggtttcattgttccttt-aaaggtgtcttgattattattctcagagaca 435

                                                                       
Query: 361 ggatttacaatctgtacattcaaattctta---tttgtacttcccaattcctc-cctgtt 416
           |||||||||||| | |||||||    ||||   ||||  ||| |||||||||| ||| ||
Sbjct: 434 ggatttacaatcag-acattca----cttattttttg--cttaccaattcctctcct-tt 383

                                                                       
Query: 417 tcttt-tgtttttcttctctggaactggatatttctatatagtcctag-atttctgtgct 474
           | ||| |||||||||| ||||| |||| || |||||  ||||||||||  ||||| ||| 
Sbjct: 382 t-tttctgtttttcttttctgggactgcatttttctggatagtcctagtttttctatgcc 324

                                                                       
Query: 475 ttcctgtgcagatcagcagagaattcatctctacctggttttgattcccatatcctgaga 534
           ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 323 ttcctgtgcagttcagcagagaattcatcactatctggttttgattcccatatcctgaga 264

                                                                       
Query: 535 ttaaagtcctt-tctaagcagatc-tcaacacctttttttaaaattttctgtctcacagt 592
           ||||| ||| | |||||||||| | |||||||||||||  |||||||||||||| |||||
Sbjct: 263 ttaaa-tccctctctaagcaga-catcaacaccttttt--aaaattttctgtcttacagt 208

            
Query: 593 t 593
           |
Sbjct: 207 t 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1000
Length adjustment: 10
Effective length of query: 594
Effective length of database: 990
Effective search space:   588060
Effective search space used:   588060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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