BAC Information

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BAC

Clone NameMSMg01-383L15
ChromosomeY (Build37)
Map Location 1,792,392 - 1,792,585
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137
Downstream geneLOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383L15.T7 (MSMg01no383_l15.b1)MSMg01-383L15.TJ (MSMg01no383_l15.g1)
ACCAG487329AG487330
length760751
length of high quality
(start - end)		493 (41 - 533)482 (71 - 552)
definitionCHROMAT_FILE: MSMg01no383_l15.b1 PHD_FILE: MSMg01no383_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:50 2005CHROMAT_FILE: MSMg01no383_l15.g1 PHD_FILE: MSMg01no383_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATCACATAAAAACAGACAGAAGAAGTAGAAATTAAAGACATATTTGGGCA
AGATGAATAGTGAAGTGGAGATTAGAGCAAGCAGAAAGGACTGAGGAGAT
AGCTCACTGCTTAGGCCCACTGATTGCTTTTGCACAGGACCAGGGTTCAA
TTTCTAACATCCACATAGTTGTTCACAACCACCTGCAATTCTAGTTCTAG
ACGATCTGATGACCTCTTTGGAGAACACGCACACACACACACACAGACAT
ATCACACATATACACTCACCGACAGAGAAAAAAAAAAAAACTTTTAGAAA
ACAATTATACAAACAAAAAAGGAGTCAAGTATAGATTTATTCCCCTTTAA
TACCAGCACTCAGAAGCAGGCTAAACTCTGTACGTTGAATGCCTGCCTAA
CTGATAGGTGTGTTTTCAGAATTTTATTATTCTTTTATTTTTTCTTTTCT
TTTTTTTTTTTTTTTGGATTTTTGGACTATTTCCGTATTTGTTTAAAGAT
TCTAGAGGATTTTTTTCTGATTTATTTTTTCTAATGGTTTAGACTTCCTT
TCGGGCTTTTTAGAATTTTAGAGTTTTAAGGGTTTTTTTTTTGATTTATG
GAGGCATGGATGCATTTCAGCGCGNACGCCNTCCTCCCCCCCTCTCCCTC
TCCTTTTCCTTCTCTCTCTCTCCACCCCCCTTTTACTTCTTCCTCCCCCT
CTCTCATCCC

TGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGAAGCCAGCAGAGTTCATGGACTGCAAGC
AGGTCTTCTGAAAAAGCAATGCATGATATAATTACCTGAATTTTCTGTCA
GTGCTCTTCAATATTGTGTTCTATGTGATGCAATATTCCACTCTCTTTCT
CTATCTCTGTCTCTGTCTCTGTCCCTCTCTGTCTCTCTCTCTGTCTCTTT
GTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTCT
GTATCTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCT
CTCTCTCTCTCTGTCTGTCTCTCTCAATATCTATTCCTCTAAAACTCAGT
ATGACTAATGATTCTCTTCTCTTCTCTTCTACAAAGGGGATGATATTTGA
ATGTCATCGGCAAATTGTTATTCTGAATCGGAGTAGGGAAAGGACACTTT
ANATCTGTTTTTACACCCAAGAGCATGGCTTTTAAAACCTGGTAAATCAG
TAGGAGATGAGACAATGTATAGAAGAGCTTGCTTCTTTTGCTTTGGTTTG
GTTTACCTTTGTTTATTTCTATTACACGCAATCATTATAAGAAACTCTGA
ATAATACTGCCTAATGCAATTTACTGGAGGGAATAAGTACCTCCCAACCA
CCTTATATTTCCCCGTTACAAAATTAAAAAAATTTATTAAAAGCAGTTTT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_l15.g1 MSMg01no383_l15.g1 CHROMAT_FILE:
MSMg01no383_l15.g1 PHD_FILE: MSMg01no383_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:50 2005
         (482 letters)



>mm_chrY_1792259_1793140
          Length = 882

 Score =  255 bits (132), Expect = 4e-72
 Identities = 185/210 (88%), Gaps = 16/210 (7%)
 Strand = Plus / Minus

                                                                       
Query: 20  ggactgcaagcaggtcttctgaaaaagcaatgcatgatataattacctgaattttctgtc 79
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 327 ggactgcaagcaggtcttctgcaaaggcaatgcatgatataattacctgaattttctgtc 268

                                                                       
Query: 80  agtgctcttcaatattgtgttctatgtgatgcaatattccactctctttctctatctctg 139
           |||||||||||||||||| ||||| ||||||||||||||| ||||||||||||  |||||
Sbjct: 267 agtgctcttcaatattgtattctacgtgatgcaatattcctctctctttctct--ctctg 210

                                                                       
Query: 140 tctctgtctctgtccctctctgtctctctctctgtctctttgtctctctgtctctctgtc 199
           |||  ||||||    || |||||||||||||  ||||||      |||||||||||||||
Sbjct: 209 tct--gtctct----ctgtctgtctctctct--gtctct------ctctgtctctctgtc 164

                                         
Query: 200 tctctgtctctctgtctctctgtctctctc 229
           ||| | ||||||| ||||||||||||||||
Sbjct: 163 tctgtctctctctctctctctgtctctctc 134


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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