Query= MSMg01no400_e01.b1 MSMg01no400_e01.b1 CHROMAT_FILE:
MSMg01no400_e01.b1 PHD_FILE: MSMg01no400_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:30 2005
(629 letters)
>mm_chrY_2432605_2433638
Length = 1034
Score = 406 bits (210), Expect = e-117
Identities = 496/606 (81%), Gaps = 40/606 (6%)
Strand = Plus / Plus
Query: 42 gttcaaaaagaacaaaaatgcaatgcaag-ttcaggatattgatcacctatccatgcatc 100
|||||| ||||| |||||| |||||| || |||||||| |||||| || |||| ||||||
Sbjct: 242 gttcaagaagaagaaaaattcaatgc-agtttcaggatcttgatc-cccatccctgcatc 299
Query: 101 ttaaacccataggttctagccagaatgtaaggtcagaagtctaaacttcacctatactac 160
|||| |||||||| | || ||||| || |||||||||||||||||||||||||||||||
Sbjct: 300 ttaatcccatagggtggagtcagaaggttaggtcagaagtctaaacttcacctatactac 359
Query: 161 aactaactctgaagatatctagcaatctccagttcctttctggtacttacccacaccaag 220
||| |||| ||||||| |||||| |||||| ||| || ||||||||||| |||||||||
Sbjct: 360 aaccaactgtgaagatttctagccatctcctgtttctgtctggtacttagtcacaccaag 419
Query: 221 tctgcattaaggaata-t---agtctagtgtgagatagtgccagcagttaattgcaaaat 276
||||| |||||| ||| | |||||||||||||||||||||||||| | |||||||||
Sbjct: 420 tctgccttaaggcatactgcaagtctagtgtgagatagtgccagcagatgattgcaaaaa 479
Query: 277 cccactctgagttgagttgtatgtaaactcagacatctgtaatatagacacacatg--ca 334
|||||| || ||||| ||||| ||||| | |||||||| ||||||||||||||| | ||
Sbjct: 480 cccactatgtgttgacttgtacgtaaaatgagacatctataatatagacacacacgtaca 539
Query: 335 tattcacaaatactcacagaaagaggcaagaagtagaggagctgaatcttagaaatcctc 394
|| |||| ||||||||||||||||| ||||||| ||| |||||| |||||| || ||||
Sbjct: 540 ta--cacacatactcacagaaagaggtaagaagtggagaagctgagtcttaggaaccctc 597
Query: 395 aaggaagagaatga----aaatcttgtaaggcacagaggtaagagaaaaactgtgtcttt 450
|||||||||| || |||||||||||||||||||||| |||||||| |
Sbjct: 598 aaggaagaga--gagtagaaatcttgtaaggcacagaggt----------ctgtgtctat 645
Query: 451 ctgcacaaaatcaggccattctttcttccatcactgaac-gggaaggc-tcactatcact 508
|||||||||||| || ||||| ||||||| | || | |||| ||| |||||||| ||
Sbjct: 646 ctgcacaaaatcgggttattctggcttccatta-tggagtgggagggcctcactatccct 704
Query: 509 tatca--ct-atctgataaggtatagacagttgatgaaggatgaatagtcagttttcatc 565
|| || |||||| || |||| |||||||| || ||| | | ||||||||||||||
Sbjct: 705 ---cattcttatctgagaaagtatggacagttgttgggggagggagagtcagttttcatc 761
Query: 566 aaaggtattgactttgaaggtgatagattgttcattctctactggaagc--cagatgtcc 623
|||||||| | ||||||| ||||||| |||| ||| ||||| ||| ||| || |||||
Sbjct: 762 aaaggtatggcctttgaaagtgataggttgtccatgctctagtggtagctcca--tgtcc 819
Query: 624 aagagt 629
||||||
Sbjct: 820 aagagt 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1034
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1024
Effective search space: 633856
Effective search space used: 633856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_e01.g1 MSMg01no400_e01.g1 CHROMAT_FILE:
MSMg01no400_e01.g1 PHD_FILE: MSMg01no400_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:30 2005
(539 letters)
>mm_chrY_1655567_1656500
Length = 934
Score = 497 bits (257), Expect = e-145
Identities = 467/539 (86%), Gaps = 21/539 (3%)
Strand = Plus / Minus
Query: 1 acaattttggaccctatgaaagtaatggattgtccaaatgctccgggactgagaatcttg 60
|||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct: 726 acaagtttggaccctatgaaagtaatagattgcccaaatgctcctggactgagaatcttg 667
Query: 61 gggaagct-ctaggttttttcttaatctgcaatgtcatttagacattagagcaagcagag 119
||||| || ||||| |||||||||||||||||| |||||||| ||| ||||||| |||
Sbjct: 666 gggaa-ctgctagggattttcttaatctgcaatggcatttagatattggagcaagtggag 608
Query: 120 atgatttgctccttctcttaggcaatcagattttatcctggaagacaaacgttgtgagc- 178
||| |||||||||||| ||||||| ||||| ||| || |||||||||||| ||||||||
Sbjct: 607 atgctttgctccttcttttaggcactcaga-tttgtcttggaagacaaactttgtgagca 549
Query: 179 cttgagagggtttgctggaggagaagggatattgacagttctctacccaacctgcaaggc 238
|||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| |||
Sbjct: 548 tttgagagggtttgctggaggagaagggatattgacagtgctctaaccaaactgcatggc 489
Query: 239 acacagctagaccttgttccctctg-atgcatagaagtgtctgatggtattag-atggga 296
|||||||||||| |||||||||||| | |||||||| | ||||||||| || | || ||
Sbjct: 488 acacagctagactttgttccctctgta-gcatagaattttctgatggtgtt-gcat--ga 433
Query: 297 ttcttgatgaggacagaatctgaggaaaggttcctggtagagaaa-tgaagtgcagttat 355
| |||| ||||||||| |||||||| ||| |||| |||||| ||| || |||||||||||
Sbjct: 432 tccttgctgaggacaggatctgaggcaagtttccaggtaga-aaactgtagtgcagttat 374
Query: 356 acaacctag-aaagtatataccattgatcattgtgagcctgaaacagaaagcacccaag- 413
|||| ||| ||| |||| |||||| ||| ||||||||||| | || |||| | ||
Sbjct: 373 acaaggtagcaaa-tataaaccattaatc---gtgagcctgaagctgagagca-ctgaga 319
Query: 414 cattggacctaatgtatgattggtgagacagattgaagagattttgtttgttttgaattc 473
|||||||||||||| || |||| ||||||| ||||||| ||||||||||||||||||||
Sbjct: 318 cattggacctaatgcataattgctgagacactttgaagacattttgtttgttttgaattc 259
Query: 474 tctgtataggtatggatacattgtctcatgggaagggggagtgtgg-attccctgtggt 531
|||||||||||||| |||||||||| ||||||||| |||||||||| || |||||||||
Sbjct: 258 tctgtataggtatgaatacattgtcccatgggaagagggagtgtggcat-ccctgtggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 934
Length adjustment: 10
Effective length of query: 529
Effective length of database: 924
Effective search space: 488796
Effective search space used: 488796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
