BAC Information

Click to search

BAC

Clone NameMSMg01-400L06
ChromosomeY (Build37)
Map Location 2,566,772 - 2,567,213
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227
Downstream geneLOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400L06.T7 (MSMg01no400_l06.b1)MSMg01-400L06.TJ (MSMg01no400_l06.g1)
ACCAG500263AG500264
length801801
length of high quality
(start - end)		479 (43 - 521)375 (73 - 447)
definitionCHROMAT_FILE: MSMg01no400_l06.b1 PHD_FILE: MSMg01no400_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:06 2005CHROMAT_FILE: MSMg01no400_l06.g1 PHD_FILE: MSMg01no400_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAA
TTCAGCCAGTCTCACCTTAGATTTTTCCTGCTGCTAAGACCACTAGTGTT
CTCTGGTACATTCAACCTTACTGATCTCCAGGCGACTAGACTTGTCAGGG
TCAGAGTGGAAACTGGATATTTTACAACCAATTATCTGGGCCACTTGCCT
ACCGCTGGTCACCTCAGTTTCTCTACCTAAATTCCTTACTGATAATTTCC
TCAGCATGCAGCCTGCCATGATTCACAGACAGGTACAACAACTGCTTCTG
CCTCAGTATTAAATTCATGTCCTTTCTCTTCTTCAGGAATGTTAATATTT
GACGATATACAAATGCATTTATCTGAGAAAGAATGGGCTATGCTAACCCA
TCGAAGAAGACACTCTACAGTGTTGTAATGCTGGTCATCTACAAGCTAAC
CACCTGTCTAGGTTAACTGATTAACTATAACTCATTTCCTTTGTGTATAC
ATTGTGTAACCTGGACTGTAATGGTGAAAAATACACCCTGGGAGATATTA
CCTTTTGGGTTATAATTGATTTAGATTGCTTCCTCACTGTTGAAGCAAGA
ACTGCTACCGAAAAAAAAATTTTCCAGGTAATTTTTTTTTGGCGTAATTG
TGTTTCTTCGTTCTTTAAAATTATCTCTCTCCTGGTTAACCTGGCATTGC
TCTCCCAAACAACTCGCTCCATTTACTCATACCCCAAACTCACTTGGTCC
TTTCGTTTCCCCCTACCCTTTCTGTTCTAAAACTGCCTCTCTCCCATTCT
C

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGTATATGTTACTTGACCATTTTACCT
TACTGCTTTTAATATTCTTTCTTTGTTTTGTTCATTTGGTGCTTTGATTA
ATATATGATGGCAGGGATTTTTGTTTTTGTTGTTGTTTTTCTGGTCCAAA
CTATTTGGAGTTCTGCATGCTTCTTGTATGTTCATGGACATCTCTTTCAT
TAGGTTAGGAAAGGTTTCTTTTATAGTTTTGTTGAAGATATTCACTGGCC
CTATAATTTGGAAATCTTACTTCTCATCTATACCTGTTATCCTTATGTTT
TTTCTGCTCCTTGTGTCCTAGATTTCCTGGATGTACTTAATTTTACTTAA
TTTTTAAAATCTGTCTCAAAAACTCAAAATGGGCAGTTTTTCCAAAGAAA
TTCAAATTGATAGTACTTTATTAACTATTACTAATATTGCATACTTTCAA
ATGTTTACCTTTTCTATTGTCAATACCGTAAAATCTCCCCGCATTTGGTA
AACATGAAAATATATCCCCTCCAGTTAAAGGATATTGAAACCCGTCGTAA
AATTTTCAATTCTTCTTCTTTCTCTCAGCCCTCTTTTCCCCCCGCGTTAT
ATCATTCTCGCCCCCGTCCTCCTATTCCTCCTTATTTAACTTTGCCGTAC
CCTCCCCCGGCCCTCTCCCCTTTCCGCACTTCCCCTTCGCCTTTTCCTCT
ACCCGTTTTTATTTCCTCTCATTTTTCCCCCCCCTACATCTCTCCTCACC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_l06.b1 MSMg01no400_l06.b1 CHROMAT_FILE:
MSMg01no400_l06.b1 PHD_FILE: MSMg01no400_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:06 2005
         (479 letters)



>mm_chrY_2566459_2567341
          Length = 883

 Score =  304 bits (157), Expect = 1e-86
 Identities = 378/467 (80%), Gaps = 39/467 (8%)
 Strand = Plus / Minus

                                                                       
Query: 25  ttagatttttcct-gctgctaagaccactagtgttctctggtacattcaaccttactgat 83
           |||| |||||||| |||||||||||| | |||| ||||| ||||||||  ||||||||||
Sbjct: 755 ttag-tttttcctggctgctaagaccccaagtgatctctagtacattcggccttactgat 697

                                                                       
Query: 84  ctccaggcgactagacttgtcagggtcagagtggaaactggatattttacaaccaatt-a 142
           ||||| || |||||| ||| ||   ||||||||||||||||||||||||   ||| || |
Sbjct: 696 ctccaagcaactagatttggcaaaatcagagtggaaactggatattttatggccagttca 637

                                                                       
Query: 143 tctgggccacttgcctaccgctggtcacctcagtttctctacctaaattccttactgata 202
            |||   |||||||      ||||||| ||||||||||| |||||||||| |||||||||
Sbjct: 636 -ctgatacacttgc------ctggtcatctcagtttctccacctaaattctttactgata 584

                                                                       
Query: 203 atttcctcagcatgcagcc--tgccatgattcacagacagg---tacaacaactgcttct 257
           ||||| || ||||||||||  | ||||||||||||| || |   |||||||   ||||||
Sbjct: 583 atttcttcggcatgcagcctatcccatgattcacaggcaagccctacaaca---gcttct 527

                                                                       
Query: 258 gc--ctcagtattaaattcatgtcctttctcttcttcagga---atgttaatatttgacg 312
           ||  ||  ||| |||||| |  ||| ||||||| |||||||   |  |||| |||| |  
Sbjct: 526 gctgct--gtactaaatttaaatccattctctttttcaggactta--ttaacatttcaaa 471

                                                                       
Query: 313 atatacaaatgcatttatctgagaaagaatgggctatgct-aacccatcgaagaagacac 371
           |||||||||||||||| |||||| |||| |||||||| || ||||| ||  |||||||||
Sbjct: 470 atatacaaatgcatttctctgaggaagattgggctatactgaacccttcccagaagacac 411

                                                                       
Query: 372 tctacagtgttgtaatgctggtcatctacaagctaaccacctgtctaggttaactgatta 431
           ||||||||||||||||||||| ||||||||||||||| || |||||||        || |
Sbjct: 410 tctacagtgttgtaatgctggacatctacaagctaactacatgtctag--------ataa 359

                                                          
Query: 432 acta-taactcatttcctttgtgtatacattgtgtaacctggactgt 477
           |  | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 358 a--agtaactcctttcctttgtgtatacattgtgtaacctggactgt 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 883
Length adjustment: 10
Effective length of query: 469
Effective length of database: 873
Effective search space:   409437
Effective search space used:   409437
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |