BAC Information

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BAC

Clone NameMSMg01-404D16
ChromosomeY (Build37)
Map Location 2,603,659 - 2,603,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236
Downstream geneEG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404D16.T7 (MSMg01no404_d16.b1)MSMg01-404D16.TJ (MSMg01no404_d16.g1)
ACCAG502951AG502952
length750754
length of high quality
(start - end)		476 (38 - 513)427 (67 - 493)
definitionCHROMAT_FILE: MSMg01no404_d16.b1 PHD_FILE: MSMg01no404_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:49 2005CHROMAT_FILE: MSMg01no404_d16.g1 PHD_FILE: MSMg01no404_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATC
TCTATCCGGTTTTGATTCCCATATCCTGAGATTAAAGTCCTTTCTAAGCA
GATCTCAACACTTTTTTTTAAAATTTTCTGTCTCACAGTTCTTGAAGAAT
AGATGGGGGAGCAGAGAAAATTTCACCCCAAAAAATTGGCAATTAGTGGC
TGCAGGAGTGAGGGCCAGTTTTCTTCATAGATTTGGCTCCTCAGAGGCTG
CCCATGTTCCAGTGGATGTGTTTCCCTAACCCCACATATGTAGTCAGCAC
TAAATTCACTCAGTGGTCTTTATTAAAATGTGCATGGAATTAAAGCTAAA
AGTGATACAGGAGAAATGGAGAGCAATTCAAGGAGGAGAAGATGGGGATG
GATTTACTCAAACTCATTATGTTTATGTACAAAGTTCTTCAGCAAAACAT
TTAAAACTAAGTAAGTAAGTAAATAAGTAAATAAGTAAGTAATAAGCAAG
CAAGCAAGTAAAAAATAAATATATGAGTAAATAAACAAATATATTTTTAT
GCGATATCACGTGCAATAGGCATGAAAATGTGTGTGTGTGTGTGTGTTCG
TCCCCNCCCTCCTCNCCCCAACCCCCCCNCTCCTTTTATTCCATATTCTC
TTCCCCCCTTTATATTTATCTCCCCCTTTTTACCCTCTACACCCCCCCCT
CTTTTTTTAACATTCTCTTTATAAATCGACCCCTCCCCTTTTTTTATTTT


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCTGGGAAGAGGAGGTGGGACTTGATGCATTAG
GGACTAATAAGACATCACTGACATTACCGTTAGGCGAAGAAGGTTTGGAG
CCCTCTTTGTCTGATGGGGCCTGTTGCTTGACAAGAGAGTTCTTCTCCAA
AATGCTTTGGAGGAGAATTGGAAAGAATACAGTTATGTAGGGTAGGGAAC
AAACTTTTGAACTCCTTCTGGAAGAGGAGGCATTTATGAATTTCTTTTAA
GCACACGTGGGAAGTCTATGGGATGCCTGGGCAGATGTGCAATGTCCCAT
AGAGTCTTGGAAACTTTGCGTTAGTTCTCAAAACTTTTTGGTGCATAAGG
ACCTGCCCTGAGAATTTGAAGATCCCAGATCTCCTTGGTTAGATTGGGAA
GGGTGTAGGGAACCTTGAATGTGTGGGGAAATTACCTGTCCATGTTGTCC
AGCAGACGATGGCCCAGGCACTGTGTTATCTTCTTTGAATTTGTGACTGG
TATCTCCAGTCCCTGTGTTTGGAAGAAGCTGCAGGCACTCTGGGCCCCCG
ACTGGTCAAAATCCCTATGTTCTTCTAACCCCGCGCGAATTAGGCTGGCT
CCTTTTTCCTTTTTTATGTTTGCACCCTGCAAATAAGCCCCCCCTTTCCC
GTGGGAATGGTGTAAACCCTATTGTTTGTTTTCCTGTCTTGCGTGTCCCC
TTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_d16.b1 MSMg01no404_d16.b1 CHROMAT_FILE:
MSMg01no404_d16.b1 PHD_FILE: MSMg01no404_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:49 2005
         (476 letters)



>mm_chrY_2603455_2604331
          Length = 877

 Score =  145 bits (75), Expect = 5e-39
 Identities = 96/103 (93%), Gaps = 1/103 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctctatccggttttgattcccatatcctgagattaaagtcctttctaagcag 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaattcatctctaactggttttgattcccatatcctgagattaaagtcctttctaagcag 248

                                                      
Query: 65  atctcaacactttt-ttttaaaattttctgtctcacagttctt 106
           | ||||||| |||| |||| ||||||||||||||||| |||||
Sbjct: 247 acctcaacatttttgtttttaaattttctgtctcacaattctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 877
Length adjustment: 10
Effective length of query: 466
Effective length of database: 867
Effective search space:   404022
Effective search space used:   404022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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