BAC Information

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BAC

Clone NameMSMg01-409B23
ChromosomeY (Build37)
Map Location 213,377 - 213,676
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3
Downstream geneJarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409B23.T7 (MSMg01no409_b23.b1)MSMg01-409B23.TJ (MSMg01no409_b23.g1)
ACCAG506682AG506683
length774770
length of high quality
(start - end)		472 (49 - 520)468 (73 - 540)
definitionCHROMAT_FILE: MSMg01no409_b23.b1 PHD_FILE: MSMg01no409_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:22 2005CHROMAT_FILE: MSMg01no409_b23.g1 PHD_FILE: MSMg01no409_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAACAAGGAACTCAGATAGCTGAGAAGCACTTAAAGAAATGT
TCAAAGTCTTTAGTCATCAGAGAAAGGCAAATCAAAATGACCCTGAGATT
CCACTTTACACCAATCAAAATGGCTAAGATTAAAAACTCAGGTGACAGCA
CATGTTGGTGAGGATGCGGAAAAAGAGGAACACTCCTCCATTGCTGTTAG
GATTTCAAACTAGTACAACCACTCTGGAAATCAATTTGGCAGTTCCTTAG
AAAACTGAAAATATTTCTACCTGAAGACCCAGCTATACTACTCCTGGGCA
TATGCCCAAAAGATGCCCCACCATATCAAAGAGGCATGAACTCCACTGTG
TTCCTGGCAACCTTATTTATAATAGCCAGAAGCTGGAAACAACCCAGATG
TCCCAAGACAGAAAAATGGATACTGAAAATGTGTTTCATTTACACAATGG
AGTACTACTCAGCTATTAAGAATGAGGACATCATGAAATTTACAAGTTAA
TGGATGGAACTAGAAAATATCATCCTAAGTGAGGTAACTCAGACCCCCAG
GACATGCCTGGNTATGTACTCACTGATTAAATATCCAAAGGAACCTGCGA
ACTTTAAAAGGGCTACACCCCCAAGGGGTTTGGAACCCCTCCCGAGCTAT
CCTGAAGGGGAACCCTGGGAGAAAAAAAGGAAAAAAAATCTTGGGGGAAA
CCAAAAAATTTATTTTTTTCTTTA

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAGAAGGAGACAATCAGTATCCGTAGT
GGGGAGAACCTCTTTCTTGGGCCTGTTCTGCAGGGCGAACAAGGATTGGC
ATAGCTGTTGGTCCTGAAAAGAAAACAAAAGGGCGAACCCACAAAGGAGC
ATCAGTGACCAGATCTTTCCACATTATGATATATGGGATCTGGTCGGTGT
TGCTCTTAGATCCAGAGCCAAAAATATGCCTCTTGACAGCCAATATAAGA
GGCAGAGAGAAAGGACCCTCAGGAGGCCATCCAATCAGGAAGGAGGGCCA
CTCTGAGAAGCAAAAAGTAATCCATTTATTTTTCTTTACTTCTACTGAAA
GATTGTGAGCTCTAGTCTTAACCTCCTTCCAGTGTTGTAAGTAAAGCTAA
GAGGGGTGGAAGGTCCATGTCCCAATCTGTCCAAAAATAACGTCAGTCCT
AGTCCACACACAAAAAGAGAAATGAAAAATAAAATACCAGTGTGCTCCTG
CCATGAGTACCACAGAAGACACACTGAATAACTTGGTAGTGCTCTCTTTG
CCCCTATCCCCAGATGAAGTCTAACTTCCCTGGGATCCCGATTTTCTGTT
GAGAAGTTGGGAGATCCCCCCAGTCCTCTTTTTGCCATGNGGGGGTTTAT
GGGACTTCTTACAACTCCCTTTTGGTTATCCTGTACAAAAAATACCCTCT
GTGTGTCCTCGTAAACCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_b23.g1 MSMg01no409_b23.g1 CHROMAT_FILE:
MSMg01no409_b23.g1 PHD_FILE: MSMg01no409_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:22 2005
         (468 letters)



>mm_chrY_213377_214244
          Length = 868

 Score =  580 bits (300), Expect = e-170
 Identities = 300/300 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagaaggagacaatcagtatccgtagtggggagaacctctttcttgggcctgttctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 caagaaggagacaatcagtatccgtagtggggagaacctctttcttgggcctgttctgca 241

                                                                       
Query: 61  gggcgaacaaggattggcatagctgttggtcctgaaaagaaaacaaaagggcgaacccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gggcgaacaaggattggcatagctgttggtcctgaaaagaaaacaaaagggcgaacccac 181

                                                                       
Query: 121 aaaggagcatcagtgaccagatctttccacattatgatatatgggatctggtcggtgttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 aaaggagcatcagtgaccagatctttccacattatgatatatgggatctggtcggtgttg 121

                                                                       
Query: 181 ctcttagatccagagccaaaaatatgcctcttgacagccaatataagaggcagagagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ctcttagatccagagccaaaaatatgcctcttgacagccaatataagaggcagagagaaa 61

                                                                       
Query: 241 ggaccctcaggaggccatccaatcaggaaggagggccactctgagaagcaaaaagtaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  ggaccctcaggaggccatccaatcaggaaggagggccactctgagaagcaaaaagtaatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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