Query= MSMg01no412_f23.b1 MSMg01no412_f23.b1 CHROMAT_FILE:
MSMg01no412_f23.b1 PHD_FILE: MSMg01no412_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:42 2005
(578 letters)
>mm_chrX_122666914_122667891
Length = 978
Score = 491 bits (254), Expect = e-143
Identities = 319/342 (93%), Gaps = 5/342 (1%)
Strand = Plus / Plus
Query: 4 ggaattcactaaaactctgggaatttggggcacctgtgaggaa---tttttttttcctga 60
||||||||||| ||||||| ||| ||||||||||||||||||| ||||||||||||||
Sbjct: 201 ggaattcactagaactctgagaaattggggcacctgtgaggaattttttttttttcctga 260
Query: 61 tttgattatgtgaaataggaagaccaaccccaaatgtagatcgtttgttctgttgtagaa 120
||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |||||
Sbjct: 261 tttgattatgtgagataggaagtccaaccccaaatgtagatcgtttgttttgttatagaa 320
Query: 121 acaactctaaaatataaatttcattgatg-tcagttttttaataaaagtgtgtagctagg 179
||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 321 acaactctacaatataaatttcattgatgct-agttttttaataaaagtgtgtagctagg 379
Query: 180 actaaattctagtagttacaatcaagatagtttttatgatcctacactgtttctgtcttt 239
||||||||||||||||| |||||||||| |||||||||||| || |||||||||||||||
Sbjct: 380 actaaattctagtagtttcaatcaagatcgtttttatgatcttatactgtttctgtcttt 439
Query: 240 tattacagtgtttcctgaacactgaggtggagatttgatggtgacctcccttgtaggact 299
|||||||||||| ||||| |||||||| ||||||||||||||||||||| |||| |||||
Sbjct: 440 tattacagtgttccctgagcactgagggggagatttgatggtgacctcctttgtgggact 499
Query: 300 gaatgttagaaggtgcctcaggctttgcatattatctggctg 341
|||||||||||||| |||||||||||||||||||||||||||
Sbjct: 500 gaatgttagaaggtccctcaggctttgcatattatctggctg 541
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_f23.g1 MSMg01no412_f23.g1 CHROMAT_FILE:
MSMg01no412_f23.g1 PHD_FILE: MSMg01no412_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:43 2005
(453 letters)
>mm_chrY_1655631_1656478
Length = 848
Score = 391 bits (202), Expect = e-113
Identities = 394/460 (85%), Gaps = 19/460 (4%)
Strand = Plus / Plus
Query: 1 aaaacaaacaaaatctcttcaatctgtctcaccaatcatacattaggtccaatg-cttgg 59
|||||||||||||| ||||||| ||||||| |||| || |||||||||||||| | |
Sbjct: 201 aaaacaaacaaaatgtcttcaaagtgtctcagcaattatgcattaggtccaatgtc-tca 259
Query: 60 gtgctttctgtttcaggctcacaatgatcaatggtatatacttt-ctaggttgtataact 118
||||| || | ||||||||||| ||| |||||| |||| ||| ||| ||||||||||
Sbjct: 260 gtgctctcagcttcaggctcac---gattaatggtttata-tttgctaccttgtataact 315
Query: 119 gcacttca-tttctctaccaggaacctttcctcagattctgtcctcatcaagaatcccat 177
||||| || ||| |||||| |||| ||| |||||||| ||||||||| |||| || |||
Sbjct: 316 gcactacagttt-tctacctggaaacttgcctcagatcctgtcctcagcaaggat--cat 372
Query: 178 -ctaataccatcagacacttctatgc-atcagagggaacaaggtctagctgtgtgccttg 235
| || ||||||||| | |||||||| | |||||||||||| ||||||||||||||| ||
Sbjct: 373 gc-aacaccatcagaaaattctatgcta-cagagggaacaaagtctagctgtgtgccatg 430
Query: 236 caggttgggtagagaactgtcaatatcccttctcctccagcaaaccctctcaag-gctca 294
||| |||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 431 cagtttggttagagcactgtcaatatcccttctcctccagcaaaccctctcaaatgctca 490
Query: 295 caacgtttgtcttccaggataaaatctgattgcctaagagaaggagcaaatcatctctgc 354
||| |||||||||||| || ||| ||||| ||||||| |||||||||||| |||||| |
Sbjct: 491 caaagtttgtcttccaagacaaa-tctgagtgcctaaaagaaggagcaaagcatctccac 549
Query: 355 ttgctctaatgtctaaatgacattgcagattaagaaaaaacctag-agcttccccaagat 413
|||||| ||| |||||||| |||||||||||||||||| ||||| || |||||||||||
Sbjct: 550 ttgctccaatatctaaatgccattgcagattaagaaaatccctagcag-ttccccaagat 608
Query: 414 tctcagtcccggagcatttggacaatccattactttcata 453
||||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 609 tctcagtccaggagcatttgggcaatctattactttcata 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 848
Length adjustment: 10
Effective length of query: 443
Effective length of database: 838
Effective search space: 371234
Effective search space used: 371234
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
