BAC Information

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BAC

Clone NameMSMg01-415C07
ChromosomeY (Build37)
Map Location 722,951 - 723,447
singlet/doubletsinglet
Overlap geneUsp9y
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246
Downstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415C07.T7 (MSMg01no415_c07.b1)MSMg01-415C07.TJ (MSMg01no415_c07.g1)
ACCAG511271AG511272
length707712
length of high quality
(start - end)
178 (71 - 248)497 (70 - 566)
definitionCHROMAT_FILE: MSMg01no415_c07.b1 PHD_FILE: MSMg01no415_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:26 2005CHROMAT_FILE: MSMg01no415_c07.g1 PHD_FILE: MSMg01no415_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGTACGGACCGCGGAA
TTCAAGGCCTTACAACACCATGATAAAAGCAATCTACAGCAAACCAGTAG
CCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCA
GGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACT
TGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATTC
TTATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATA
GTATATATAAGTGTCTTTTTTTTTTCCACCAGAGAACTCCTAAACCTGAT
AAACTGCTTCCGTGCACCAGCTGGATATAAAATTACCTCCAACTAGTCAA
TGGCCTTCCTCTACACAAAGAATAAACTGGTTGAGAAAGAAATTAGGGAA
ACAACACCCTTCTCACTAGTCACACCTAATATATCAATATCTCGGCGCGA
CTCTAACTAAGGAAGTGTAAGATCCGGATGACTTAACTCTTCATGCCTTC
TGATGACACGACTTATTATATCATCTCCTTAAGATGTAAAGCCCTCCTCC
TGCTCCCCGTATCGTTCGGACCCTCTTCTTGTACCCCCGGTGTACTTTGC
CTTTCGTCATCCACATAGTTTACGCACACCCCCTTCTACTTTTTCCCCCC
ATCCTCG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTACAGCAGAAATTCAATATGTATAGACCAGGCTGGCTTTGA
ACTACCAGAGATCAGTCAACAGTGCTGAGAATAAAGGTATGAACCTTAAT
CTGCCTAGTTTGCTAAATGTCATAAAAATAATTATGTTGTTTAACTCTCC
TTTCCTTTTGAGTATAATATTTCCCACCACATTTAATTTTGATATGCTAT
ATCCTTTCAACATATAGAAAATATTTTAGTGTAAAATGGTGGAATTACTT
CTCTAGCTCAGTATTTATTTTGAGTGGTAAAATGAGATTAAATTTTATGA
TATTATAATTATTTCTCCCACCAGCCTTTGAGTATTGATCAAAAATATCT
TAAAAAGACATTTCTCTTATGATTACAAACATAGGTATTAATAACTCAAA
GTAGGACAGTCTGAAATCCTTTACAAAATTAATGCTTCAGATTTCCTTTA
TTAACAACTGACATACATACTATTCCCTCTAGTGCTTGTTAAAAGAAGTA
GCATAAAGAAAAATTTTTAAAAAGTGAGCATGGTGACAGGTCTTTAATCT
GAGCACTCATGAAACAGAGGCAGGCTGTTCTCTGTGATTTCAAGTCCATT
CTGGTCTTTGTATCAAGTTCTAAGCTAGTCAAAGTTACATACAGTTGAGA
ACTTGTCTCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_c07.g1 MSMg01no415_c07.g1 CHROMAT_FILE:
MSMg01no415_c07.g1 PHD_FILE: MSMg01no415_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:26 2005
         (497 letters)



>mm_chrY_722751_723647
          Length = 897

 Score =  905 bits (468), Expect = 0.0
 Identities = 490/500 (98%), Gaps = 6/500 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcaatatgtatagaccaggctggctttgaactaccagagatcagtcaacagtgctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcaatatgtatagaccaggctggctttgaactaccagagatcagtcaacagtgctgag 260

                                                                       
Query: 61  aataaaggtatgaaccttaatctgcctagtttgctaaatgtcataaaaataattatgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaaggtatgaaccttaatctgcctagtttgctaaatgtcataaaaataattatgttg 320

                                                                       
Query: 121 tttaactctcctttccttttgagtataatatttcccaccacatttaattttgatatgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaactctcctttccttttgagtataatatttcccaccacatttaattttgatatgcta 380

                                                                       
Query: 181 tatcctttcaacatatagaaaatattttagtgtaaaatggtggaattacttctctagctc 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcctttcaacatatagaaaatattttagtgtaaaatggtggaattacttctctagctc 440

                                                                       
Query: 241 agtatttatttt---gagtggtaaaatgagattaaattttatgatattataattatttct 297
           ||||   |  ||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agta---aaattacagagtggtaaaatgagattaaattttatgatattataattatttct 497

                                                                       
Query: 298 cccaccagcctttgagtattgatcaaaaatatcttaaaaagacatttctcttatgattac 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cccaccagcctttgagtattgatcaaaaatatcttaaaaagacatttctcttatgattac 557

                                                                       
Query: 358 aaacataggtattaataactcaaagtaggacagtctgaaatcctttacaaaattaatgct 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aaacataggtattaataactcaaagtaggacagtctgaaatcctttacaaaattaatgct 617

                                                                       
Query: 418 tcagatttcctttattaacaactgacatacatactattccctctagtgcttgttaaaaga 477
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 618 tcagatttcctttattaacaactgacatacatactattccctctagtgtttgttaaaaga 677

                               
Query: 478 agtagcataaagaaaaattt 497
           ||||||||||||||||||||
Sbjct: 678 agtagcataaagaaaaattt 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)