BAC Information

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BAC

Clone NameMSMg01-437B02
ChromosomeY (Build37)
Map Location 1,098,510 - 1,098,907
singlet/doubletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437B02.T7 (MSMg01no437_b02.b1)MSMg01-437B02.TJ (MSMg01no437_b02.g1)
ACCAG527987AG527988
length771765
length of high quality
(start - end)		379 (45 - 423)398 (85 - 482)
definitionCHROMAT_FILE: MSMg01no437_b02.b1 PHD_FILE: MSMg01no437_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:19 2005CHROMAT_FILE: MSMg01no437_b02.g1 PHD_FILE: MSMg01no437_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTCCAGAGGATC
CGCGGAATTCTTTACTATATTGGATATTAATCCTCTATCTGATTTAGGAT
AGGTAAAGATCCTTTTCCAATCTGTTTTTTTTTGTCTTATTGACCATGTC
TTTTGCCTTGCAGAAGCTTTGCAGTTTTATGAGGTCCCATTTATTGATTC
TCGATCTTACAGCACAAGCCATTGCTGTTCTATTCATTTCCTGCAATTCC
TTAAGGGATTTTTGTGCTTCCTCTTTAAGGTCTTCTGCCTGTTTATCAGT
GTTCTCCTGTATTTCTTTAAGTGAGTTATTAAAGTCCTTCTTGATGTCCT
CTACCATAATCATGAGATATGATTTTAAATCCGGGTGGGTATAGCTTTTC
AGGTGTGTTGGTGTGCCTAGGTCTGGGTGGGGTGGGAGTGCTGCCTCCTG
ACGATGCTTACCTCCCTTTTTTTCCCTCTCTCTCTCCTCCCCTTTTCCTC
CTTTCTCCCTTTTTTCCCTCTTCTTTTTCCCTTTTTTTTTCTTTTCTTCC
CCTCCTTTCCTTCTTTTTTCTCTTTTTTCCTTCTTTTTCCCCCCCCCTTT
TTCCTCCCTTCCATCTTTCCCTTATCTCCTTCTTCCCATCCTATTTCCTC
TTCATTATTTCCACCCCCTCTCTTCTACCCTTTTCTTTTTTCCTCTATCT
TATTTCCTCTCCTTTACCCCCTCTCATCTTCTACACCTATTCCTCTCCTC
TTTCTCCCTCTTCCTCTTCCT

CCACTCCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTTCCCTACTTCA
ATACCTACATTATTTTACTCAAACCACAGGCTCAGGTTTATTTGCAGAAA
ATAGAAGTGTCTATTTTCCATCTCACTTGTACCCTTGGTTCATGTTCTGT
ATATCCCTTGAAAAACTTTTTGAGACATCAGATTGGGCACAGTGACATCC
TGAAGGTGCAGCCTCCTAGAACCAAAGGTCTGAAAAATACAAGGTAAGAG
AGACAGTGTAGACCCAAGACTAATACCATATTTGAAACAATAAACACCTA
TAGTCTGTGGGTCCATCAGTGATGACTGTCAGGCAATCTTGCAGCCCTTT
CCTTTCACTATTTATCAGATTTGTTGTCAGATGCACCATTTTCTTTTCCT
GCTCCCTGGTGACAATTGTTGGGATAGGGGTTTGGCCCTACATAATACAC
TTTTGCTTCCAGTTATTATTGCCCGCTACACTCTGCATTTTAAATATCCT
ACTGCTTTTTCCGTGCCTTTCTGCATTCTTCCTTTATTTTGGATCATATC
TTTCCCCCTCTCACCCTTGTGTTTGTGTTTCTTTTTTCTCCCCCTTCCAT
TTCCTTTCTCTTAATGTTTTCCCATTTTATTAGACTTCCTCTCCCCCCCC
CTTTCATTCTCCTTATTTTCTCCCTTCATTTTATTCTCTCTCCACCTCCT
TTTCTCCTCTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_b02.g1 MSMg01no437_b02.g1 CHROMAT_FILE:
MSMg01no437_b02.g1 PHD_FILE: MSMg01no437_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:19 2005
         (398 letters)



>mm_chrY_1098310_1099107
          Length = 798

 Score =  770 bits (398), Expect = 0.0
 Identities = 398/398 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcttccctacttcaatacctacattattttactcaaaccacaggctcaggtttatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 actcttccctacttcaatacctacattattttactcaaaccacaggctcaggtttatttg 539

                                                                       
Query: 61  cagaaaatagaagtgtctattttccatctcacttgtacccttggttcatgttctgtatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cagaaaatagaagtgtctattttccatctcacttgtacccttggttcatgttctgtatat 479

                                                                       
Query: 121 cccttgaaaaactttttgagacatcagattgggcacagtgacatcctgaaggtgcagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cccttgaaaaactttttgagacatcagattgggcacagtgacatcctgaaggtgcagcct 419

                                                                       
Query: 181 cctagaaccaaaggtctgaaaaatacaaggtaagagagacagtgtagacccaagactaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cctagaaccaaaggtctgaaaaatacaaggtaagagagacagtgtagacccaagactaat 359

                                                                       
Query: 241 accatatttgaaacaataaacacctatagtctgtgggtccatcagtgatgactgtcaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 accatatttgaaacaataaacacctatagtctgtgggtccatcagtgatgactgtcaggc 299

                                                                       
Query: 301 aatcttgcagccctttcctttcactatttatcagatttgttgtcagatgcaccattttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aatcttgcagccctttcctttcactatttatcagatttgttgtcagatgcaccattttct 239

                                                 
Query: 361 tttcctgctccctggtgacaattgttgggataggggtt 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tttcctgctccctggtgacaattgttgggataggggtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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