BAC Information

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BAC

Clone NameMSMg01-447G05
ChromosomeY (Build37)
Map Location 1,316,273 - 1,316,797
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447G05.T7 (MSMg01no447_g05.b1)MSMg01-447G05.TJ (MSMg01no447_g05.g1)
ACCAG535856AG535857
length771790
length of high quality
(start - end)		556 (45 - 600)381 (76 - 456)
definitionCHROMAT_FILE: MSMg01no447_g05.b1 PHD_FILE: MSMg01no447_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:16 2005CHROMAT_FILE: MSMg01no447_g05.g1 PHD_FILE: MSMg01no447_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAACCGCGGA
ATTCCAACTTAGTTCTCTTTGTCTCTCAGTGTCCTCTACTCTTTGTGTGT
CCCTTATTACTTTTAATGGTCACCATCAATTAGAACTTTCTTATCTTCAA
TCTGGTCTGTTTTATGCATGTGAATTTTGGATTTCTTAAAAAAGATATCT
TTGTGGGATTAGAGAGATGAATCAATGGTAGCAAGCACTTTTGCACCACA
AGAAAAATGGATTTGGTTTCTTGATTTCATATCCAATGGCAAATAATCAC
CTTTAATGGCAGCTCCAGAGGACTCTGACAACGCATGTCTCTGTGTTCAC
CTGTACTCAAAAGCACATGCCATATCCCCACCCACATAAGTAAAGATAAT
AAATCTTAAAATGTGAGACAGGTTTCTTTAAGTGTCATTATTCAAAGAAA
ACCTGATTTTCTCTGATTTCTGAGTCTATTTCAATCAGTTTTCTGGGTTT
CACCTTTTGCAACAAGGCCACATTTCTTTTAAATGTCCCACTTTCCCAAA
ATTTTTGTTTCTCCTTCAGTCTTCACATCAGAGGNTCTACCTATGTCCTG
TCCTTCTCCCCTACTTCCTAAACATCCATCTTTTTCTGCCATCCCTGCTC
CTCCAAGTTCCATCTCCATTTTCTTATTCTTCATGCAGACCAGAGAAACT
GTTCATTTTAGCATGAATGAATTTAGGTGGATGTACTGTTCACCGCCTGA
AATGGAAATTTTCTTCCTCTT

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCTGGGAAGAGGAGGTGGGACTTG
ATGCATTAGGGACTAATAAGACATCACTGACATTACCGTTAGGCGAAGAA
GGTTTGGAGCCCTCTTTGTCTGATGGGGCCTGTTGCTTGACAAGAGAGTT
CTTCTCCAAAATGCTTTGGAGGAGAATTGGAAAGAATACAGTTATGTAGG
GTAGGGAACAAACTTTTGAACTCCTTCTGGAAGAGGAGGCATTTATGAAT
TTCTTTTAAGCACACGTGGGAAGTCTATGGGATGCCTGGGCAGATGTGCA
ATGTCCCATAGAGTCTTGGAAACTTTGCGTTAGTTCTCAAAACTTTTTGG
TGCATAAGGACCTGCCCTGAGAATTTGAAGATCCCAGATCTCCTTGGTTA
GATTGGGAAGGGTGTAGGGAACCTTGAATGTGTGGTTAAATTACCTGTCC
ATGTTGTCCTGCATACAATGGCCCATGCCCTGTGTTATCCCCTTTGTATT
TGCGACTGGTATCTTCTACCCCTGTGGTCGTAAATATGCTTTATGCATCT
CTGTCATTCTACAGGTTTATAATTTCTAAGTTTCTTCATTCCCTTTTTAC
CTCCGTCTGCTTTCTTTCCTCTTACCAACTTTTTGTCCCCTCTTTTCGTT
CCTCCTTCCTCTTTTTGTTGCTTTTTCCTTCTATCTTTTTTTCCTTCTTT
CTTCCTCCTCTTTTTTCTTTCATTAATCTCCACCATTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_g05.b1 MSMg01no447_g05.b1 CHROMAT_FILE:
MSMg01no447_g05.b1 PHD_FILE: MSMg01no447_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:16 2005
         (556 letters)



>mm_chrY_1316049_1317001
          Length = 953

 Score =  360 bits (186), Expect = e-103
 Identities = 451/551 (81%), Gaps = 48/551 (8%)
 Strand = Plus / Plus

                                                                       
Query: 24  tttgtctctcagtgtcctctact-ctttgtgtgtcccttattactttt--aatggtcacc 80
           |||||| | |||||||||||||| |||||||||||| ||||| |||||  || | |||||
Sbjct: 225 tttgtcccccagtgtcctctactcctttgtgtgtcctttatt-ctttttcaa-gatcacc 282

                                                                       
Query: 81  atcaattagaactttcttatcttcaat-ctggtct--gttttatgcatgtgaattttgga 137
           | ||||| || |||||||| |||| || |||||||   ||||  || ||||||| |||||
Sbjct: 283 agcaatttgatctttcttaccttc-atcctggtctccctttt-ggc-tgtgaatattgga 339

                                                                       
Query: 138 tttcttaaaaaagatatctttgtgggattagagagatga-atcaatggt--agcaagcac 194
           |||||| |||||| ||| ||| ||||| ||||||||||| | || ||||  ||  |||||
Sbjct: 340 tttctt-aaaaaggtatatttatgggactagagagatgaca-cagtggtcaag--agcac 395

                                                                       
Query: 195 ttttgcac-cacaagaaaaatggatttggtttcttgatttcatatccaatggcaaataat 253
           |||||||| | |||||| | ||||||||||| ||||| ||| |||||||||||  | |||
Sbjct: 396 ttttgcactc-caagaagactggatttggttccttgaattcgtatccaatggctcacaat 454

                                                                       
Query: 254 cacctttaatggcagctccagaggactctgacaacgcatgtctctgtgttcacctgtact 313
           || |||||||| ||||||||| |||| |||||||| ||| |||||||| |||||||||||
Sbjct: 455 catctttaatgccagctccaggggac-ctgacaactcatttctctgtggtcacctgtact 513

                                                                       
Query: 314 caaaagcacatgccatatccccaccca--cat--aagtaaagataataaatcttaaaatg 369
           || ||||||||||| ||    ||||||  |||  ||||||| |||||||||||||||| |
Sbjct: 514 cacaagcacatgcccta----cacccactcataaaagtaaaaataataaatcttaaaaag 569

                                                                       
Query: 370 tgagacaggtttctttaag-tgtcattattcaaa-gaaaacctgattttctctgatttct 427
            |||||| ||||| ||| | | |||||||| ||| | |||||||||||||||||||||||
Sbjct: 570 agagacaagtttcattaggct-tcattatttaaatg-aaacctgattttctctgatttct 627

                                                                       
Query: 428 gagtctatttcaatcagttttctgggtttcaccttttg--caacaaggccacatttcttt 485
           |||||| |||  ||||||||| ||||||| ||||| ||  |  ||||| |||||| ||||
Sbjct: 628 gagtctgtttggatcagttttttgggtttaaccttgtgttc--caaggtcacattccttt 685

                                                                       
Query: 486 taaatgtc--ccact--ttcccaaaatttttgtttctccttcagtcttcacatcagaggn 541
           ||    ||  |||||  ||||| ||  ||||||||||||| ||| ||||||| |||||  
Sbjct: 686 ta----tctgccactcgttccccaa--ttttgtttctcct-cagacttcacaccagagat 738

                      
Query: 542 tctacctatgt 552
           |||||||||||
Sbjct: 739 tctacctatgt 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 953
Length adjustment: 10
Effective length of query: 546
Effective length of database: 943
Effective search space:   514878
Effective search space used:   514878
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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