BAC Information

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BAC

Clone NameMSMg01-451O14
ChromosomeY (Build37)
Map Location 1,266,155 - 1,266,850
singlet/doubletsinglet
Overlap genenone
Upstream geneJarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451O14.T7 (MSMg01no451_o14.b1)MSMg01-451O14.TJ (MSMg01no451_o14.g1)
ACCAG539289AG539290
length763761
length of high quality
(start - end)		712 (46 - 757)686 (76 - 761)
definitionCHROMAT_FILE: MSMg01no451_o14.b1 PHD_FILE: MSMg01no451_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:19 2005CHROMAT_FILE: MSMg01no451_o14.g1 PHD_FILE: MSMg01no451_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATATAGACTGGACCAGAAAAGAAATTCCTCCTGACACATAATAA
TCAGAAGAAGAAATGCACTAAATAGAGATATACTGTTAAAAGTAGTAAGG
GAAAAAGGTCAGGTAACATATAAAGGCAGGCCTATCAGAATTACACCAGA
CTTTTCACCAGAGACTATGAAAGACAGAATATCCTGGACAGATGTTATAC
AGATACTAAGAGAACACAAATGCCAGCCCAGGCTATTAAACCCAGCCAAA
CTCTCAATTACCACAGATGGAGAAACCAAAGTATTTCACGATAAAAAACA
AATTCACACATTAACTTTCCATGAATCCAGCCTTTCAAAGAATAATAACA
GAAAAAAAAAAAACCAATACAAGGACAGGAACAACGCCCTAGAAAAAGCA
AGAAAGTAATCCCTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAA
TGCAAACTCTAACAACAAAAATAATCGAGGCAACAATTACATTTCCTTAA
TATCTCTTCATATCAATGGATTCAGTTCCCCAATAAAAAGATATAGACTG
GCTATAAAAACAGGACCCAATAGTCTGCTGCTTACAGGAAACCCATCTCA
GGGAAAAAGACAGACACTGTCTCAGAGTGAAAGGCTAGAAAATAATTTTC
CAAGCAAATGGTCTGAAGAAATCAGCTGGAGTAACCATTCAAATATCGAT
TAAAATTGATTTC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXGCATCAAAAAAATTGTATGAAGTTCTCA
AGGAATTAATTAATGTAGTTCTTAATATACAATGTCTTTACTGAACATAT
ACAGACCACTTATATTTCAATCTCCTAAATAGCAACTCATTTTGTAGCAC
TTACATTACATTAAGTGCAAAAGTAATCCAGAGATTATTTAAAATAAAGA
AGGATCAGGGGATATGGCCCAGAGACAATGCCATGTGTGTGTTCAAACAT
TCACCTACAACACCAGTGCTTATGATTTTGGGAGGGGCAGAGATAGGAAG
ATGACTGTGGCTTCCTGAAAGCCAGCTCAGCAAGAAACCCAGTCACAAGG
GGATAAGTTATGTAGGAAAAGAGTAGATCACACTATACCCTTCCCTAGCC
TCTGAACTTACCTGTACAGTTCTCTATGCAGACTCACATAAATATGATTA
AAATATGCAAGAGGTTATTTTGCATAGCTTATATTCAAAAGCAATGTTGT
TTTAGACTAGAAACCTGAGGACTTTATATCATTATAGTTCCTGGAGCAAA
CTCCCAAGATATAGATGATGGGTATATCTTCTTACTGTGCAAAGGAAACC
TCAGTTAAGTGTGTGTGTCAGTGACTCCAAACAGCTTTCCTCCTCTATGT
TACTTTATATAGCATAGAATGATCTGTAAATAATGAAAATATGAAAACAA
AGCTTTTTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_o14.g1 MSMg01no451_o14.g1 CHROMAT_FILE:
MSMg01no451_o14.g1 PHD_FILE: MSMg01no451_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:19 2005
         (686 letters)



>mm_chrY_1265965_1267053
          Length = 1089

 Score =  644 bits (333), Expect = 0.0
 Identities = 606/711 (85%), Gaps = 43/711 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaaa-aaattgtatgaagttctcaaggaattaattaatgtagttcttaatatacaatg 59
           |||||| | |||||||||| |||||||||||||||| || |||||||||||||||| |||
Sbjct: 191 tcaaaatatattgtatgaaattctcaaggaattaatgaaagtagttcttaatataccatg 250

                                                                       
Query: 60  tctttactgaacatatacagaccacttatatt-tcaatctcctaaatagcaactc--att 116
           ||| |||||||||||||||||||||||||||| || |||||||||||| ||||||  |  
Sbjct: 251 tctgtactgaacatatacagaccacttatattgtc-atctcctaaataacaactccta-- 307

                                                                       
Query: 117 ttgtagcacttacattacattaagtgcaaaagtaatccagagattatttaaaataaagaa 176
            | ||||| || |||| ||||||| |||||||| |||||||||| |||||||||||||||
Sbjct: 308 -tatagcagtttcattgcattaagggcaaaagtcatccagagatcatttaaaataaagaa 366

                                                                       
Query: 177 ggatcaggggatatggcccagag--acaatgcc-atgtgtgtgttcaaacattcacctac 233
           ||||||||  | ||||||||| |  | || ||| || ||| || ||| ||||||||||| 
Sbjct: 367 ggatcaggcaagatggcccaggggta-aa-gccaat-tgtttggtcagacattcacctat 423

                                                                       
Query: 234 aacaccagtgcttatgattttgggaggggcagagataggaagatgactgtggcttcctga 293
           |||| ||||||| | ||  | |||||||||||||| || |||| ||||||||||||||||
Sbjct: 424 aacaacagtgctcagga--tggggaggggcagagacagaaagaagactgtggcttcctga 481

                                                                       
Query: 294 aagccagc------------tcagcaagaaacccagtcacaaggggataagttatgtagg 341
           |||| |||            |||||||||||||| |||| ||||| | || ||| |  ||
Sbjct: 482 aagcaagcctcactcctaggtcagcaagaaaccctgtcataagggaacaaatta-g--gg 538

                                                                       
Query: 342 a---aaagagtagatcacactatacccttccctagcctctgaacttacctgtacagttct 398
           |   || ||| ||| |||||| |||| |||||| ||||||||| |||||||||||| |||
Sbjct: 539 agtgaaggagcagaacacactgtacctttccctggcctctgaatttacctgtacaggtct 598

                                                                       
Query: 399 ctatgcagactcacataaatatgattaaaatatgcaagaggttattttgcatagcttata 458
            |||||| || |||||||||||||||||| ||| |||||||||| ||||||||| |||||
Sbjct: 599 gtatgcacacacacataaatatgattaaagtatacaagaggttactttgcatagattata 658

                                                                       
Query: 459 t-tcaaaagcaatgttgttttagactagaaacctgaggac-tttatatcattatagttcc 516
           | | ||||||||||||||||||| ||||| |||||||||| ||||||||||||  | |||
Sbjct: 659 tgt-aaaagcaatgttgttttagcctagagacctgaggacttttatatcattaggggtcc 717

                                                                       
Query: 517 tggagcaaactcccaagatatagatg---atgggtatatcttcttactgtgcaaaggaaa 573
           |||||||||||||| | ||||||| |   |||||||||||||||||||||||||||||||
Sbjct: 718 tggagcaaactccccatatataga-gagaatgggtatatcttcttactgtgcaaaggaaa 776

                                                                       
Query: 574 cctcagttaagtgtgtgtgtcagtgactccaaacagctttcctcctctatgttact-tta 632
           |||||||||||||||||||||||||||||||||||||||||||||||||  || || || 
Sbjct: 777 cctcagttaagtgtgtgtgtcagtgactccaaacagctttcctcctctaaattcctatt- 835

                                                              
Query: 633 tatagcatagaatgatctgtaaataatgaaaatatgaaaacaaagcttttt 683
           ||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 836 tatagcacagaatgatctgtaaataatgaaactatgaaaacaaagcttttt 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1089
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1079
Effective search space:   729404
Effective search space used:   729404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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