BAC Information

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BAC

Clone NameMSMg01-469K16
ChromosomeY (Build37)
Map Location 1,311,437 - 1,311,891
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469K16.T7 (MSMg01no469_k16.b1)MSMg01-469K16.TJ (MSMg01no469_k16.g1)
ACCAG552848AG552849
length785770
length of high quality
(start - end)
366 (74 - 439)481 (77 - 557)
definitionCHROMAT_FILE: MSMg01no469_k16.b1 PHD_FILE: MSMg01no469_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:19 2005CHROMAT_FILE: MSMg01no469_k16.g1 PHD_FILE: MSMg01no469_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCAAAGAGGATCCGCGG
AATTCAAACTTGTCGACACAAATAAATAGAGACAAAGATAGAGGAAAGTT
ATAGAAAAAGATAGAGACAAAGATACAGACAAAGATAGAATCCTACCTCC
AAGCAGGGTCTCTGAGAATTTGGGTAGGCCACAAATCATGGTGGAGAAGC
CCCCAAATGTAAGACCTCAGAAGCTGGGCCTCCTCTCAAGTCCCGGGATG
AGCTGGCCAGCACCCCAATGACCCAAGAGAAAACCACAACTGATGCAAAC
TGCAAGAGGTTTTACTATTATTTGGCTGAGAACAAAGTCACTCTGCCTAG
CAGGGCAGGGGAGTTTGACACCGAGCTGTGACAGTAAGGGGCTTTTAGCA
GCTAGCTGGGGAATTGGGAGGAGTTGGGAGGAGAGTTGGCTCTTTTTCCT
CTTCTTTTCTTCTCTCCTTTTTTCTTCTCTTTCTCCTCTCCTCCCCCTTT
TCCCCTCCTTTTTCTCTCTCTTTTCTTTCCCTTCTCCCCCTCTTTCTTTT
CCTTCCNCTCTCCCCCCTTCTCTTTTCTCCTTTTCCTTTTTCTTTTTCCC
TTTTCTTTTTTTTTTTTTCCTCTCCTTTCCTCCCTCTCTTTTGTTCCCCC
CTTCTGTTTCGTTCCCTTTCTCTTTTTTTTTCTTTTCCTCCTTTTTCTCC
CTCTACCTCTCGCTTATCTTTCCTTCTTTTTCCCCTTTTCTCTTACCCCC
CCTATACCCTCTTACTTTCCTCCCACCTTATCTTC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCAAAAAAAATGTATGAAGTTC
TCAAGGAATTAATTAATGTAGTTCTTAATATACAATGACTGTACTGAACA
TATACAGACCACTTATATTTCAATCTCCTAAATAGCAACTCATTTTATAG
CACTTACATTACATTAAGTGCAAAAGTAATCCAGAGATTATTTAAAATAA
AGAAGGATCAGGGGATATGGCCCAGAGACAATGCCAGGAGTGTGTTCAAA
CATTCACCTACAACACCAGTGCTTATTATTTTGGGAGGGGCAGAGACAGG
AAGATGATTGTGGCTTCCTGAAAGCCAGGCTCACTATCAGCTCAGCAAGA
AACCCAGTCACAAGGGGATAAGTTATGGAGGAAAAGAGTAGATCACACTA
TACCCTTCCCTAGCCTCTGAACTTACCTGTACAGTTCTCTATGCAGACTC
ACATAAATAAGATTAAAATATGCCAGAGGTTATTTTGCATAGCTTATGTG
TTGTTTTAGACTAGAAACCTGAGGACTTTATATCATTATAGTTCCTGGAG
CAAACTCCCAAGATATAGATGATGGGTATATCTTCTTACTCTGCAAAGGA
AACCTCATTTAATTGTGTGTGCCAGTGATTCTCAACAGCTTTCCCCCTTC
CACGTTCCTTTATAAAACACAACAAGATCTGCAAATAATGAAAACCATCA
TACCAAGCTTCCTTTGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_k16.g1 MSMg01no469_k16.g1 CHROMAT_FILE:
MSMg01no469_k16.g1 PHD_FILE: MSMg01no469_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:19 2005
         (481 letters)



>mm_chrY_1311014_1311892
          Length = 879

 Score =  369 bits (191), Expect = e-106
 Identities = 395/471 (83%), Gaps = 28/471 (5%)
 Strand = Plus / Minus

                                                                       
Query: 13  tgtatgaagttctcaaggaattaattaatgtagttcttaatata-ca-atgactgtactg 70
           ||||||| ||||||||||||||||| || || |||||| ||||| || ||  ||||||||
Sbjct: 878 tgtatgatgttctcaaggaattaataaaagtggttctttatataccacat--ctgtactg 821

                                                                       
Query: 71  aacatatacagaccacttatatttcaatctcctaaatagcaactcattttatagcactta 130
           ||||||||||||||||||||||| | |||||||||||| |||||| || ||||||| || 
Sbjct: 820 aacatatacagaccacttatattgccatctcctaaataacaactccttgtatagcagttt 761

                                                                       
Query: 131 cattacattaagtgcaaaagtaatccagagattatttaaaataaagaaggatcaggggat 190
           |||| ||||||| ||||||||||||||||||| ||||||||||||||| || | | ||| 
Sbjct: 760 cattgcattaagggcaaaagtaatccagagatcatttaaaataaagaaagacctgtggag 701

                                                                       
Query: 191 atggcccagag--acaatgccaggagtgtgt--tcaaacattcacctacaacaccagtgc 246
           ||||||||| |  |    ||||  |||| ||  ||  |||||||||||||||| ||||||
Sbjct: 700 atggcccaggggta----gcca--agtgagtgatcccacattcacctacaacaacagtgc 647

                                                                       
Query: 247 ttattattttgggaggggcagagacaggaagatgattgtggcttcctgaaagccaggctc 306
           |||  ||   ||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct: 646 ttaggatg--gggaggggcagagacaggaagatgactgtggcttcctgaaagccagcccc 589

                                                                       
Query: 307 actatc--agctcagcaagaaacccagtcacaagggga-taagttatggag-gaaaagag 362
           |||  |  |||||||||||| |||  |||||||||| | ||| ||| |||| |||  |||
Sbjct: 588 act--cctagctcagcaagagacctggtcacaaggg-agtaaattagggagtgaag-gag 533

                                                                       
Query: 363 tagatcacactatacccttccctagcctctgaacttacctgtacagttctctatgcagac 422
            ||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||
Sbjct: 532 cagagcacacaatacccttccctagcctctgaacttacctgtacaggtctgtatgcatac 473

                                                              
Query: 423 tcacataaataagattaaa--atatgccagaggttattttgcatagcttat 471
            |||||||||| |||||||  ||||   ||||||||| |||||||| ||||
Sbjct: 472 acacataaatatgattaaagtatata--agaggttatgttgcatagattat 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 879
Length adjustment: 10
Effective length of query: 471
Effective length of database: 869
Effective search space:   409299
Effective search space used:   409299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)