BAC Information

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BAC

Clone NameMSMg01-481F09
ChromosomeY (Build37)
Map Location 2,028,604 - 2,029,185
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840
Downstream geneLOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481F09.T7 (MSMg01no481_f09.b1)MSMg01-481F09.TJ (MSMg01no481_f09.g1)
ACCAG561766AG561767
length771766
length of high quality
(start - end)		597 (40 - 636)582 (68 - 649)
definitionCHROMAT_FILE: MSMg01no481_f09.b1 PHD_FILE: MSMg01no481_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:57 2005CHROMAT_FILE: MSMg01no481_f09.g1 PHD_FILE: MSMg01no481_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:57 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGACAATCCGCGGAATTCTT
ATAGGATCTCCATTAAGACTTGAGTCTATGTAGCATTACTACAATATAGT
ACATATTCGTGGATGTGTGTGCTATTACTTAGTGATTGTTATATATGTAC
AATAATAACAGGAAAATCATATTAATAGCAGGAACCTTTCCTAAAATGAG
TCCCTCACAGCCTTGCTTAATGAGGGCTCACCTGTCACAGATTATATTAT
ATTCCGAGGCAGGCCATTTCAGGATGATCACCTGTTGGTTATTAGCTTGT
CCCATTGTGGCTCCTGACATCTTTTCCCTTCGAATAACATAAATGAAGCG
TATATATATCCCTTTGTGCAGTACTGATAGCATATCCTAAGCGCTTGAAG
ATGACTGGAAGAAGAAACAGAAGCAGAATAACCAATCCTATAATAATTCC
CAAAGTTATAAGAAAATTCCATAAAGAATTATTTTTAACAAAGTTTATGA
TTGAATTTGAAAAACAATTAGCCAATTCTGCTACTGAAGAACTCTTCAGT
CTGGAGTGACTGATGGCACGGATCTGGGGATGTAAAGTATCCATATCAAG
AGCAAGCTGTGAAATGTTCCACACACCATGAAGATGTTCTTGTATCTGTT
CTGTTCCCAGAACATTTCTGACCCATAGTANGGCAGACGCGGTGAACAAA
ATCATTTAAATTGGCATGACATGAGATAGTTAAATGGGTTTTTAATTATG
AACCTGAAGTCCTATGTAAAG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATAAGATGTCCTGCTATGAGGAGCAACAGTCAT
ATGGGGGTCCTGTTACCTGGGTAACTGTAGAGAACTAGGGAGTTGGTCTG
TCCTCGCTGCCTTGAGAGGTATATGTTAAAGGTTTTTCACGTTAAAACAG
GCAGTGTTGAAGAAGTAGCATTTGTCTGTAGAATGTGGTGATTTGAGTAT
GCTTGTCCCAGGGAATGGTGCTACTAGGAGGTGCTATTACAGCCTAGTTG
GAGTAGGTGTAGCCTTGTTTAAGGAAATGTGTCACTGTATGAGTGGGCTT
TGAGACCCTCCTCCTAGCTGTCTGAAAAACAATAGTCTTCTTCCTTCCTT
TGGATCAAGATGTAGAACTCTCTGTTCCTTCCACTCCCATCTAAAAGCAC
TGACGTGCTTCCTACCTTGATGATGGTCTGAACCTGTAAGCCAGTGCCAA
CTAAATGCTTTTCTTTATAAGTGTTACCTTGGTCGTGGTGTCTGTTCACA
GCAAAGGAAAACCTAAGACAGAGAAGTTCTACGAACTTTGTTGCTGGAGG
AAGGAGGTAAGAGGGAAGTCATCAGTTGATAAAATTCCTGGAATTTATTA
GAGAACTTCAGTCATCTTTCCCTCAAAAGAAATTGGTCCTTGTTAGAAAA
CCATAAACTAATCTACTAACCAACCATAACTATTCTGAGAATATTTGATG
CTAAGGGGCCAGATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_f09.g1 MSMg01no481_f09.g1 CHROMAT_FILE:
MSMg01no481_f09.g1 PHD_FILE: MSMg01no481_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:57 2005
         (582 letters)



>mm_chrY_2028404_2029385
          Length = 982

 Score = 1118 bits (578), Expect = 0.0
 Identities = 581/582 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataagatgtcctgctatgaggagcaacagtcatatgggggtcctgttacctgggtaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataagatgtcctgctatgaggagcaacagtcatatgggggtcctgttacctgggtaactg 260

                                                                       
Query: 61  tagagaactagggagttggtctgtcctcgctgccttgagaggtatatgttaaaggttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagagaactagggagttggtctgtcctcgctgccttgagaggtatatgttaaaggttttt 320

                                                                       
Query: 121 cacgttaaaacaggcagtgttgaagaagtagcatttgtctgtagaatgtggtgatttgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacgttaaaacaggcagtgttgaagaagtagcatttgtctgtagaatgtggtgatttgag 380

                                                                       
Query: 181 tatgcttgtcccagggaatggtgctactaggaggtgctattacagcctagttggagtagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgcttgtcccagggaatggtgctactaggaggtgctattacagcctagttggagtagg 440

                                                                       
Query: 241 tgtagccttgtttaaggaaatgtgtcactgtatgagtgggctttgagaccctcctcctag 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtagccttgttgaaggaaatgtgtcactgtatgagtgggctttgagaccctcctcctag 500

                                                                       
Query: 301 ctgtctgaaaaacaatagtcttcttccttcctttggatcaagatgtagaactctctgttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtctgaaaaacaatagtcttcttccttcctttggatcaagatgtagaactctctgttc 560

                                                                       
Query: 361 cttccactcccatctaaaagcactgacgtgcttcctaccttgatgatggtctgaacctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttccactcccatctaaaagcactgacgtgcttcctaccttgatgatggtctgaacctgt 620

                                                                       
Query: 421 aagccagtgccaactaaatgcttttctttataagtgttaccttggtcgtggtgtctgttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagccagtgccaactaaatgcttttctttataagtgttaccttggtcgtggtgtctgttc 680

                                                                       
Query: 481 acagcaaaggaaaacctaagacagagaagttctacgaactttgttgctggaggaaggagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagcaaaggaaaacctaagacagagaagttctacgaactttgttgctggaggaaggagg 740

                                                     
Query: 541 taagagggaagtcatcagttgataaaattcctggaatttatt 582
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taagagggaagtcatcagttgataaaattcctggaatttatt 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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