BAC Information

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BAC

Clone NameMSMg01-482J11
ChromosomeY (Build37)
Map Location 1,266,164 - 1,266,740
singlet/doubletsinglet
Overlap genenone
Upstream geneJarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482J11.T7 (MSMg01no482_j11.b1)MSMg01-482J11.TJ (MSMg01no482_j11.g1)
ACCAG562721AG562722
length683691
length of high quality
(start - end)
521 (38 - 558)582 (65 - 646)
definitionCHROMAT_FILE: MSMg01no482_j11.b1 PHD_FILE: MSMg01no482_j11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:32 2005CHROMAT_FILE: MSMg01no482_j11.g1 PHD_FILE: MSMg01no482_j11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:32 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAA
TTATTCTCTATCTGATGGAGGGCAAAAATTTCCATTTAACTGTGTCTCAC
ATCGAACTCTTCATTTGAAAGGGGCACCAGAATGACTCTTTTTGTTCCAG
CGGTTCTCAAATTCACATCCTCTGTCGAAGAGGTCTATAAATGTCATCCA
GTCATACCAGGGCTTCAGTGCCTCTCCCTCTCCCTATGGGAGCCTCAGAC
ACACCACATCTAGTCATAAATATTTCCTGTTCTCCCTCTGTCTATTGGGC
AACTTTTTCTTCTCGAATGCCCTTATTGGACTGAAATATTTCCTTTTTTT
TCAGTGGTGGACTCATACCTACCCTCTCTTGTAAAGTGTAAATAGATCTT
GTCGTATTGACTATGTGTGCCTGCTATATTCCAACTGTCTAAGATTACTT
CCAAATTTCTTCCTGTTACAAATATACGGAGACATTCCTCCATTCAAGAA
AAGTGGCCTTGCTCTTATGTCATCTGACTAAAGGTTTCATAGACCAAAGA
TAACCATCCAACCTGTTGGAATACTGAAACAATTGCTGCCTGCTTTCCCC
ATACCACATAAAATATGTGGATATCCTAAATTCTGCAAAAAAAGATTTGT
AAGCTGATCAAGCAATACTGTGACTCCCTCTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTT
CCAAAAATATGCATCAAAAAATTGTATGAAGTTCTCAAGGAATTAATTAA
TGTAGTTCTTAATATACAATGTCTGTACTGAACATATACAGACCAATTAT
ATTTCAATCTCCTAAATAGCAACTCATTTTATAGCACTTACATTACATTA
CATGCAAAAGTAATCCAGAGATTATTTAAAATAAAGAAGGATCAGGGGAT
ATGGCCCAGAGACAATGCCATGTGTGTGTTCAAACATTCACCTACAACAC
CAGTGCTTANGTTTTTGGGAGGGGCAGAGACAGGAAGATGACTGTGGCTT
CCTGAAAGCCAGCCTCACTACCAGCTCAGCAAGAAACCCAGTCACAAGGG
GATAACCTATGGAGGAAAAGAGTAGATCACACTATACCCTTCCCTAGCCT
CTGAACTTACCTGTACAGTTCTCTATGCAGACTCACATAAATATGATTAA
AATATGCAAGAGGTTATTTTGCAAGCTTATATTCAAAAGCAATGTTGTTT
TAGACTAGAAACCTGAGGACTTTATATCATTATAGTTCCTGGAGCAAACT
CCCAAGATATAGATGATGGGTATATCTTCTTACTGTGCAAAGGAAACCTC
AGTTAAGTGTGTGTGTCAGTGACTCCAAACAGCTTTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_j11.g1 MSMg01no482_j11.g1 CHROMAT_FILE:
MSMg01no482_j11.g1 PHD_FILE: MSMg01no482_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:32 2005
         (582 letters)



>mm_chrY_1265957_1266940
          Length = 984

 Score =  499 bits (258), Expect = e-145
 Identities = 504/591 (85%), Gaps = 29/591 (4%)
 Strand = Plus / Plus

                                                                       
Query: 7   attgtatgaagttctcaaggaattaattaatgtagttcttaatatacaatgtctgtactg 66
           |||||||||| |||||||||||||||| || |||||||||||||||| ||||||||||||
Sbjct: 208 attgtatgaaattctcaaggaattaatgaaagtagttcttaatataccatgtctgtactg 267

                                                                       
Query: 67  aacatatacagaccaattatatt-tcaatctcctaaatagcaactc--attttatagcac 123
           ||||||||||||||| ||||||| || |||||||||||| ||||||  |   ||||||| 
Sbjct: 268 aacatatacagaccacttatattgtc-atctcctaaataacaactccta---tatagcag 323

                                                                       
Query: 124 ttacattacattaca-tgcaaaagtaatccagagattatttaaaataaagaaggatcagg 182
           || |||| ||||| |  |||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 324 tttcattgcatta-agggcaaaagtcatccagagatcatttaaaataaagaaggatcagg 382

                                                                       
Query: 183 ggatatggcccagag--acaatgcc-atgtgtgtgttcaaacattcacctacaacaccag 239
             | ||||||||| |  | || ||| || ||| || ||| ||||||||||| |||| |||
Sbjct: 383 caagatggcccaggggta-aa-gccaat-tgtttggtcagacattcacctataacaacag 439

                                                                       
Query: 240 tgcttangtttttgggaggggcagagacaggaagatgactgtggcttcctgaaagccagc 299
           |||| | |   | ||||||||||||||||| |||| |||||||||||||||||||| |||
Sbjct: 440 tgctcagg--atggggaggggcagagacagaaagaagactgtggcttcctgaaagcaagc 497

                                                                       
Query: 300 ctcactacc-agctcagcaagaaacccagtcacaaggggataacctatggag-gaaaaga 357
           |||||| || || |||||||||||||| |||| ||||| | ||  || |||| | || ||
Sbjct: 498 ctcact-cctaggtcagcaagaaaccctgtcataagggaacaaattagggagtg-aagga 555

                                                                       
Query: 358 gtagatcacactatacccttccctagcctctgaacttacctgtacagttctctatgcaga 417
           | ||| |||||| |||| |||||| ||||||||| |||||||||||| ||| |||||| |
Sbjct: 556 gcagaacacactgtacctttccctggcctctgaatttacctgtacaggtctgtatgcaca 615

                                                                       
Query: 418 ctcacataaatatgattaaaatatgcaagaggttattttgca-agcttatat-tcaaaag 475
           | |||||||||||||||||| ||| |||||||||| |||||| || |||||| | |||||
Sbjct: 616 cacacataaatatgattaaagtatacaagaggttactttgcatagattatatgt-aaaag 674

                                                                       
Query: 476 caatgttgttttagactagaaacctgaggac-tttatatcattatagttcctggagcaaa 534
           |||||||||||||| ||||| |||||||||| ||||||||||||  | ||||||||||||
Sbjct: 675 caatgttgttttagcctagagacctgaggacttttatatcattaggggtcctggagcaaa 734

                                                              
Query: 535 ctcccaagatatagatg---atgggtatatcttcttactgtgcaaaggaaa 582
           ||||| | ||||||| |   |||||||||||||||||||||||||||||||
Sbjct: 735 ctccccatatataga-gagaatgggtatatcttcttactgtgcaaaggaaa 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 984
Length adjustment: 10
Effective length of query: 572
Effective length of database: 974
Effective search space:   557128
Effective search space used:   557128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)