BAC Information

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BAC

Clone NameMSMg01-483L16
ChromosomeY (Build37)
Map Location 1,751,744 - 1,752,247
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401
Downstream geneLOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483L16.T7 (MSMg01no483_l16.b1)MSMg01-483L16.TJ (MSMg01no483_l16.g1)
ACCAG563589AG563590
length759762
length of high quality
(start - end)		636 (124 - 759)601 (76 - 676)
definitionCHROMAT_FILE: MSMg01no483_l16.b1 PHD_FILE: MSMg01no483_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:03 2005CHROMAT_FILE: MSMg01no483_l16.g1 PHD_FILE: MSMg01no483_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCG
GAATTCTACGTTGCTAAAACTGGCTTTCATTATCTGTGTTATCCACACAT
TTTTTTGTATTAGTATTAACACAAATGAGTATTTGTTTAACATTTGTATC
CATACCTATGTTTTTGTTAGACATCTGTGTCCATAGCAATGTTTTCTTAG
ACACTATCCTCTGGTTTCAGGTACCATGGACTATGATTTAATTCTTCTTT
TTTCTCAGAAGAGATGTAAAATGCTATTAGGGCCCTTGAAGTCAGAAAGA
ATTAATATTCATGTTANATTTTCAGTGGCTATAATGTTGACTGTCATAGA
ATACCAAAACAAAGATTCAGGTAAATTTATGAACAAGAACACAAGACTGT
GTCTTCCTTCACCCCCACCATGGTAGTTGTCACTTCAGTCTCTCCCTTGA
CATTGTCTATTTTCATGGAAGCTTGGGGAACACAAGAAGACCTGAAAGCC
AGCACAAACCTAAGAAACTTGTAAGCATTTGAAGTCCACTTACAGATCTC
ACTGTCCATACTAGTTATCCATCTCTGTGGAAGTAAAAGAGAGCAGTAAA
GTGACTTTGATTATTTTGGCTTTTATTACACACACTGGAATTTTTAAATG
ATTGCATACTACTCCTGTGCCTAAAGGGATGTACAACTTGTGATTTCTTA
ATTTTAAATGAGTATAGCTGTTTTCTCTATAGAAAAGTTTGAGCATTTAA
TTTATTGAT

CCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCCTTCCAAGACTTTTATCAT
GAATGGGTTTTGGATATACTTAAATGATTTTTTTGCATCTAATGAGATGA
TCATGTGGTTTTGTCTTTGAGGTTGTTTATATAATAGATTATGTTGATGG
TTTGCCACATATGAAACCATCCTTGTATCCCTGGTATAATACCTACTTGG
TAAGGATGAATGAAATTTTTAATGTGTTCTTGGATATGATTAGGAATAAT
TTTACTGAGTATTTTTGTTTCTATATTCATAAGGGCCATTGTTCTGAAGT
ATTTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATTGTGG
CTTCATAGAATGAGCCGGGTAGAGTACCTTCTACTGCTATTTTGTGGAAT
TGTTTGTGCAGAACTGGAGTTAAATATACTTTGAAGGTCTGATAGAACTC
TACACATTAAACCCATCTGTTCCTGGGCTTTTTTTTTTTTTTTTTTTGGT
TGGGAGACTATTAATGCCTGCTTCTATTTCTTTAGGGTACATGAGACTGT
TTAGATCATTAACTTGATCCTGTTTTAATTTTGGTACCTGTTATCAGTCT
AGAAATTTGTCCATTTTTTCCATGTTATCCTGTTCTGTTGAGTATAGCCT
GTTGTAGAAAGATCTGATGGTGTTTTGGATTTCTTCAGGATCTGTTTTTA
TGTCTTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_l16.b1 MSMg01no483_l16.b1 CHROMAT_FILE:
MSMg01no483_l16.b1 PHD_FILE: MSMg01no483_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:03 2005
         (636 letters)



>mm_chrY_1751209_1752247
          Length = 1039

 Score =  472 bits (244), Expect = e-137
 Identities = 445/521 (85%), Gaps = 31/521 (5%)
 Strand = Plus / Minus

                                                                        
Query: 130  tctcagaagagatgtaaaatgctattagggcccttgaagtcagaaagaattaatattcat 189
            |||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||
Sbjct: 1039 tctcagaagagatgtaaaatactatttgggcccttgaagtcaaaaagaattaatattcat 980

                                                                        
Query: 190  gttanattttcagtggctataatgttga-ctgtcatagaataccaaaacaaagattcagg 248
            |  | | ||||||| |||||||| |||| | | ||||||| ||||||||||||| || ||
Sbjct: 979  ggcatagtttcagtagctataattttgatc-gccatagaagaccaaaacaaagaatcggg 921

                                                                        
Query: 249  taaatttatgaacaagaacacaagactgtgtcttccttcaccc---ccaccatggtagtt 305
            ||| |||||||||||||  | ||||||||||||||||| |  |   ||||  | ||||||
Sbjct: 920  taagtttatgaacaagatgagaagactgtgtcttccttgagtcttaccac--t-gtagtt 864

                                                                        
Query: 306  gtcacttc---agtctctcccttgacattgtctattttcatggaagcttggggaacacaa 362
            |||||  |   ||| | |   ||  ||||||  ||||||| |||||||||||||||||||
Sbjct: 863  gtcac--cccgagt-t-t---tt--cattgtaaattttcaaggaagcttggggaacacaa 813

                                                                        
Query: 363  gaagacctgaaagccagcacaaacctaagaaacttgtaagcatttgaagtccacttacag 422
            |||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 812  gaagacctgaaagccaacacaaacctaaggaacttgtaagcatttgaagtccacttgcag 753

                                                                        
Query: 423  atctcactgtccatactag-ttatccatctctgtggaagtaaaagagagcagtaaagtga 481
             |||| ||||||| ||| | ||||||||||||||||||||| |||| |||||||||||||
Sbjct: 752  ttctccctgtccacact-gtttatccatctctgtggaagtacaagaaagcagtaaagtga 694

                                                                        
Query: 482  ctttgattattttggcttttattacacacactggaat-ttttaaatgattgcatactact 540
            ||||||||||||||||||||||||||||||||| ||| ||||||| |  ||||| | |||
Sbjct: 693  ctttgattattttggcttttattacacacactgaaatcttttaaacgggtgcatgccact 634

                                                                        
Query: 541  cctgtgcctaaagggatgtacaacttg-tgatttcttaattt----taaatgagtatagc 595
            ||||||||||||| ||| |||| |||  |||||| ||  |||    ||||||||||||| 
Sbjct: 633  cctgtgcctaaagagatataca-ctttctgatttttt--tttattctaaatgagtatagg 577

                                                     
Query: 596  tgttttctctatagaaaagtttgagcatttaatttattgat 636
             | ||||||||||||||||||||||||||||||||| ||||
Sbjct: 576  aggtttctctatagaaaagtttgagcatttaatttactgat 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1039
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1029
Effective search space:   644154
Effective search space used:   644154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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