BAC Information

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BAC

Clone NameMSMg01-491I17
ChromosomeY (Build37)
Map Location 1,113,855 - 1,114,445
singlet/doubletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491I17.T7 (MSMg01no491_i17.b1)MSMg01-491I17.TJ (MSMg01no491_i17.g1)
ACCAG569513AG569514
length735756
length of high quality
(start - end)		675 (61 - 735)592 (68 - 659)
definitionCHROMAT_FILE: MSMg01no491_i17.b1 PHD_FILE: MSMg01no491_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:29 2005CHROMAT_FILE: MSMg01no491_i17.g1 PHD_FILE: MSMg01no491_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCTGTTC
TTTTGCCTGTGTTCTTTTAGGTTTGTTGAGGGATTACCTTCTTGTTTTTT
TCTAGGGCGTTGTTCCCATTCTTGTATTGGTTTTTTTCTGTTATTATCCT
TTGAAGGGCTGGATTCGTGGAGAGATAATGTGTGAATTTGGTTTTGTCGT
GGAATTTTTTGATTTCTCCATCTATGGTAATTGAGAGTTTGGCTGGGTAT
AGTAGCCTGGGCTGGAATTTGTGTTCTCTTAGTGTCTGTATAACATCTGT
CCAGGCTCTTCTTTCTTTCTTAGTCTCTGGTGAAAAATCTGGTGTTATTC
TGATAGGCTTGCCTTTGTATGTTACTTCACCTTTTTCCCTTACTGCTTTT
AGTGTTCTATCTTTATTTAGTGCATTTGTTGTTCTGATTATTATGTGTCT
GGAGGAATTTCTTTTCTGGTCCAGTCTATTTGGAGTTCTTTAGGCTTCTT
GTATGTTCATAGGTATCTCTTTCTTTATATTCGGGAAGTTTTCTTCAATA
ATTTTGTTGAAGATGTTTGCTGGTCCTTTGAGTTGAAAATCTTCATTCTC
GTCCACTCCTATTATCCGTAGGTTTGGTCTTCTCATTGTGTCCTAGATTT
CCTGGATATTTTGAGTTAGGATCTTTTTGCATTTTCCATTTTCTTTGATT
GTTGTGCTGATGTTCTCTTTGGATTCTTCTGCACC

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCAGAAATTCCAGGATACAGTATTCCTTCATAGCTTTGTGCATAA
CATACCAGGTATCATAAGGACATGTAGGTGTGTAGTATGTTATTAATCTG
TCCTCTTTATTTGATTGCAGCTTCAGAGTAGTAGGATACACTTGCCAATA
ATTCAGTTTCACATAAGAGGCTATTTATCCACACTAGTGCATAGAAAGAG
AAATGAACAATCACATAATATGAAGTGGCTAGTGAGTTGGGATTGTGTAT
TAGAAAGCCAGCTATTTTATATGAACAGGGAGCTTAATGGGCAAATTATG
CCAGATATTAGCCTGATCCAGCTGCCAGTCTCTACCTGCTGGTGCTAGGT
CTGATTACCACTGGTTTCCTCATGTTACTTTTTTGCAGATCACTTTCATT
TACTACAAGTTCAGCTGAATCAGGACCCAGTTTCCCTGCAATTTCTTATA
GTCCTGCCTCACCATGTCCAATATCATTTCTTCTTAATCGGAGTGTGCTC
CATTAGTTTTTGGTTATGAAGGTTCCCAGAAATAACCTGTGCATAATAAA
GCCATGCCAGCTTCCTCCTGTAATCTATATTCAAGGCTGAAAACAAACAA
AAAAAAAACAACTACTAAAAAAAAAAAAACAGAAAACAATCCAGGCCACA
GGAACCTATGAAGACCTAGTAAAAGGCACAATACAGCTAAGAGAGCTATA
ATCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_i17.g1 MSMg01no491_i17.g1 CHROMAT_FILE:
MSMg01no491_i17.g1 PHD_FILE: MSMg01no491_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:29 2005
         (592 letters)



>mm_chrY_1113655_1114645
          Length = 991

 Score = 1106 bits (572), Expect = 0.0
 Identities = 587/596 (98%), Gaps = 9/596 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggatacagtattccttcatagctttgtgcataacataccaggtatcataaggacatgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ggatacagtattccttcatagctttgtgcataacataccaggtatcataaggacatgtag 732

                                                                       
Query: 61  gtgtgtagtatgttattaatctgtcctctttatttgattgcagcttcagagtagtaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gtgtgtagtatgttattaatctgtcctctttatttgattgcagcttcagagtagtaggat 672

                                                                       
Query: 121 acacttgccaataattcagtttcacataagaggctatttatccacactagtgcatagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 acacttgccaataattcagtttcacataagaggctatttatccacactagtgcatagaaa 612

                                                                       
Query: 181 gagaaatgaacaatcacataatatgaagtggctagtgagttgggattgtgtattagaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gagaaatgaacaatcacataatatgaagtggctagtgagttgggattgtgtattagaaag 552

                                                                       
Query: 241 ccagcta----ttttatatgaacagggagcttaatgggcaaattatgccagatattagcc 296
           |||||||        | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ccagctagagg----a-atgaacagggagcttaatgggcaaattatgccagatattagcc 497

                                                                       
Query: 297 tgatccagctgccagtctctacctgctggtgctaggtctgattaccactggtttcctcat 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgatccagctgccagtctctacctgctggtgctaggtctgattaccactggtttcctcat 437

                                                                       
Query: 357 gttacttttttgcagatcactttcatttactacaagttcagctgaatcaggacccagttt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gttacttttttgcagatcactttcatttactacaagttcagctgaatcaggacccagttt 377

                                                                       
Query: 417 ccctgcaatttcttatagtcctgcctcaccatgtccaatatcatttcttcttaatcggag 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ccctgcaatttcttatagtcctgcctcaccatgtccaatatcatttcttcttaatcggag 317

                                                                       
Query: 477 tgtgctccattagtttttggttatgaaggttcccagaaataacctgtgcataataaagcc 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgtgctccattagtttttggttatgaaggttcccagaaataacctgtgcataataaagcc 257

                                                                   
Query: 537 atgccagcttcctcctgtaatctatattcaaggctgaaaacaaacaaaaaaaaaac 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atgccagcttcctcctgtaatctatattcaaggctgaaaacaaacaaaaaaaaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 991
Length adjustment: 10
Effective length of query: 582
Effective length of database: 981
Effective search space:   570942
Effective search space used:   570942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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