BAC Information

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BAC

Clone NameMSMg01-506I13
ChromosomeY (Build37)
Map Location 1,913,466 - 1,913,647
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1
Downstream geneSry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506I13.T7 (MSMg01no506_i13.b1)MSMg01-506I13.TJ (MSMg01no506_i13.g1)
ACCAG580906AG580907
length790756
length of high quality
(start - end)
184 (81 - 264)244 (75 - 318)
definitionCHROMAT_FILE: MSMg01no506_i13.b1 PHD_FILE: MSMg01no506_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:47 2005CHROMAT_FILE: MSMg01no506_i13.g1 PHD_FILE: MSMg01no506_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:47 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ACTAAATTTGGGCTGCAAAGACTCACATTTCGTATCGCCGGGAATCCAAC
TGTTGCANCAGCGGCTGNNCNTCTGGTCTCAAGCCTGCTCTTCCTACCTG
AAATAGGATAGTCCTTTTTTCCCCCTTGGTACTTCTTTACCTTATTACCA
CACCAAGACTTAATACTCTTGCTTTCATTTCTCCTTTCAGTTACCTGTTA
TGCCTTTCAATTGTCACCCTCTATCTGAATTCATGTTTGTGTGTGTGTGT
GTGTGTGTGTGCGTTTCTCCCTTCCCTTTTNCCCCCCCCCCCCCNCCCTT
TTNGTGNCTTCCANACCNNCCNCCCCCCCCCCGNNCCCCTTTTTTTTTCC
CCCCCCCCCCCGCTTTTTTCCCTTTTTCCCTTTTCCCCCTCTCTCTCCCC
CCCCTCGTTTTTTTTCTTGCGCCCTTTTTCTTGTTGTTTTCCTTCTCCAT
CTTCCCTTTTTTTTCTTTTTTACCTTTTTCCTATTTCCCCCCCCCTTTTT
TTTCATCCTCTCTCAACCACATTTGAATCCTTCTCTCCTTCATTGTTTTT
CCCTACATCTCTTTTCTGTTTCTTTTCCTCCCGTTAATCCCCTATTTTTT
CTTTTTTATTCCTCTTCTTTTATTCTATCCCTCCCCCGCTTTTTCCCTTC
CATTATTCACTATCTCTTTTATTTTTTTCTTTTGCCCCCTATCCCGCGCT
CTTTTTTCTCTCCCCCCCTTCTCCATCTTTTTTTTTTCCTCCACCTTTTT
TCCCCCCCCTTTTTTTTCCCCCTTTTTCCATTTCCCTCTG
CAATGCTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATAAGATGTCCTGCTATGAGGAGCAACA
GTCATATGGGGGTCCTGTTACCTGGGTAACTGTAGAGAACTAGGGAGTTG
GTCTGTCCTCGCTGCCTTGAGAGGTATATGTTAAAGGTTTTTCACGTTAA
AACAGGCAGTGTTGAAGAAGTAGCATTTGTCTGTAGAATGTGGTGATTTG
AGTATGCTTGTCCCAGGGAATGGTGCTACTAGGAGGTGCTATTACAGCCT
AGTTGGAGTAGGTGTAGCCTTGTTGAAGGAAATGTGTCACTGTATGAGTG
GGCTTTGAGACCCTCCTCCTAGCTGTCTGAAAAACAATAGTCTTCTTCCT
TCCTTTGGATCAAGACGCAGAACTCTCTGTTCCTTCCACTCCCATCTAAA
AGCACTGACGTGCTTCCTACCTTGATGATGGTCTGAACCTGTAAGCCAGT
GCCAACTAAATGCTTTTCTTTATAATTGTTACCTTGGTCGTGGTGTCTGT
TCACTGCTCAGGATAACCTAAGACAGAGAAGTTCTACGAACTTTGTTGCT
GGAGGAAGGAGGTAAGACGGAAGTCATCAGCTGATAAAATTCCTGGAATT
TATTAGAGAACTTCAGTCATCTTTCCCTCAAAAGAAGTTGGTCCTTGTTA
GAAAACCCAAAACTAACACACCACCCAATCTAACCACTTCTTATTATATT
TGATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_i13.b1 MSMg01no506_i13.b1 CHROMAT_FILE:
MSMg01no506_i13.b1 PHD_FILE: MSMg01no506_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:47 2005
         (184 letters)



>mm_chrY_1913266_1913850
          Length = 585

 Score =  329 bits (170), Expect = 7e-95
 Identities = 179/182 (98%), Gaps = 1/182 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcctgctcttcctacctgaaataggatagtccttttttcccccttggtacttctttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagcctgctcttcctacctgaaataggatagtccttttttcccccttggtacttctttac 260

                                                                       
Query: 61  cttattaccacaccaagacttaatactcttgctttcatttctcctttcagttacctgtta 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 cttattaccacaccaagacttaatactcttgcttttatttctcctttcagttacctgtta 320

                                                                       
Query: 121 tgcctttca-attgtcaccctctatctgaattcatgtttgtgtgtgtgtgtgtgtgtgtg 179
           ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tgcctttcagattgtcaccctctatctgaattcatgtgtgtgtgtgtgtgtgtgtgtgtg 380

             
Query: 180 tg 181
           ||
Sbjct: 381 tg 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 585
Length adjustment: 8
Effective length of query: 176
Effective length of database: 577
Effective search space:   101552
Effective search space used:   101552
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)