Query= MSMg01no510_i07.b1 MSMg01no510_i07.b1 CHROMAT_FILE:
MSMg01no510_i07.b1 PHD_FILE: MSMg01no510_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:07 2005
(388 letters)
>mm_chrY_1311093_1311883
Length = 791
Score = 323 bits (167), Expect = 1e-92
Identities = 299/343 (87%), Gaps = 15/343 (4%)
Strand = Plus / Minus
Query: 1 tgactgtggcttcctgaaagccagcctcactacc-agctcagcaacaaaccct-gtcaca 58
|||||||||||||||||||||||||| |||| || |||||||||| | | ||| ||||||
Sbjct: 537 tgactgtggcttcctgaaagccagccccact-cctagctcagcaagaga-cctggtcaca 480
Query: 59 agggga-taaatta-ggagtaaagtagcagaacacactacacccttccctagcctctgaa 116
| |||| ||||||| ||||| ||| |||||| ||||| | ||||||||||||||||||||
Sbjct: 479 a-gggagtaaattagggagtgaaggagcagagcacacaatacccttccctagcctctgaa 421
Query: 117 cttacctgtacagttctctatgcagacacacataaatatgattagaa-tatacaagaggt 175
||||||||||||| ||| |||||| ||||||||||||||||||| || |||| |||||||
Sbjct: 420 cttacctgtacaggtctgtatgcatacacacataaatatgatta-aagtatataagaggt 362
Query: 176 tact-ttgcatagcttatatgcaaatgcaatgttgttttagacttgaaacctgag-actt 233
|| | |||||||| ||||||||||| |||||||||| |||| || | ||||||| ||||
Sbjct: 361 ta-tgttgcatagattatatgcaaaagcaatgttgtcttagcctagggacctgaggactt 303
Query: 234 t-atatcattagg-gttccagaagcaaacaccccaaatatagagaatagataaatcttct 291
| ||||||||||| || || | ||||||| ||||| ||||||||||| | || | |||||
Sbjct: 302 ttatatcattaggagt-cctggagcaaactccccagatatagagaatgggtataccttct 244
Query: 292 tactctgcaaaggagacctcagttaagtgtgtgtgtcagtgac 334
|||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 243 tactgtgcaaaggaaacctcagttaagtgtgtgtgtcagtgac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 791
Length adjustment: 9
Effective length of query: 379
Effective length of database: 782
Effective search space: 296378
Effective search space used: 296378
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no510_i07.g1 MSMg01no510_i07.g1 CHROMAT_FILE:
MSMg01no510_i07.g1 PHD_FILE: MSMg01no510_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:07 2005
(640 letters)
>mm_chrX_53390001_53391041
Length = 1041
Score = 501 bits (259), Expect = e-146
Identities = 535/649 (82%), Gaps = 55/649 (8%)
Strand = Plus / Plus
Query: 4 aaaaacgaactgaaaaccagtgttcatttacctctacctgttgttaaaatgg-cagattc 62
|||||| ||||||| |||||| ||||||| |||||||||| | || ||| || ||||||
Sbjct: 204 aaaaacaaactgaagaccagtcttcattttcctctacctggtattgaaa-ggccagattg 262
Query: 63 ccgaaatttctatgtataggctcc-aattgcctcaaaatacagaggctcctctcagcctc 121
||||||||| ||| |||||||||| || |||||| |||| ||||||||||||||||||||
Sbjct: 263 ccgaaatttgtatatataggctccaaactgcctccaaatccagaggctcctctcagcctc 322
Query: 122 agaagtgctgggacttcagacataattcaggccaggttgttgtt-atttatttgttgttt 180
|||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||
Sbjct: 323 agaagtgctgggacttcagacataattcaggccaggctgt-gtttatttatgtgttgttt 381
Query: 181 tggtttagg-acagtaagctctaactctatatctcaggattgtctg-aaacctcacctgc 238
||||||||| || || |||||||||||| ||||| |||| ||| || |||||||| |||
Sbjct: 382 tggtttagggac-gtgagctctaactctgtatcttaggagtgt-tggaaacctcatgtgc 439
Query: 239 agctttgactggccttgaaactgaagtccccagccttacaaatgtacctggg--cctgag 296
||||| |||| ||||||||||||||||| ||||||||||||||||| || || |||
Sbjct: 440 agcttggactcaccttgaaactgaagtcctcagccttacaaatgtaca--ggaaccggag 497
Query: 297 gaaatatg--tgttctttattttttatatttaaatttttgtttgtttgtttgtttgtttg 354
|||| ||| || ||||||||||||| ||||| |||||| | |||| |||
Sbjct: 498 gaaacatgcctg--ctttattttttatttttaattttttg---g---gttt-ttt----- 543
Query: 355 tttgtttgttttttattccttttttccttgttgaagattgaaaccagagcttcttgctgt 414
||||||| |||||||| |||| |||||||||||||||||
Sbjct: 544 ----------ttttatt------------gttgaagactgaacccagagcttcttgctgt 581
Query: 415 agcagtaaaatatttgtccagccagaaa-aactttatattttagatctgctttagatttg 473
||||||||||||| ||||||||||| | ||||||||| ||||||| |||||||||||||
Sbjct: 582 agcagtaaaatatatgtccagccaggcagaactttataatttagatttgctttagatttg 641
Query: 474 tattatgatgaaaaaaattgaggagcttgtttatgataaaagcaaccatgatttcatttg 533
| || ||||||||| ||||||||||||| || |||||| || ||| ||||||| |||||
Sbjct: 642 tgttgcgatgaaaaagattgaggagcttgcttgtgataataggaactatgattttatttg 701
Query: 534 gagattgagatgcaaacacatttactctaatttat-caaaaccctagcaacaatgggacc 592
|||||||||||||| |||||||| ||| ||||||| ||||| ||||||| ||| |||||
Sbjct: 702 gagattgagatgcagacacatttgctcaaatttattcaaaaacctagcaggaatcggacc 761
Query: 593 aaaatttagatcatcctgtgatt-gcatataaacccacttgaagtcaca 640
||||| ||||| |||| ||||| | ||||||||||| |||||||||||
Sbjct: 762 aaaatgcagatcctcctctgattag-atataaacccaattgaagtcaca 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1041
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1031
Effective search space: 649530
Effective search space used: 649530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
