BAC Information

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BAC

Clone NameMSMg01-511I20
ChromosomeY (Build37)
Map Location 2,432,846 - 2,433,280
singlet/doubletsinglet
Overlap geneLOC676356
Upstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581
Downstream geneLOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511I20.T7 (MSMg01no511_i20.b1)MSMg01-511I20.TJ (MSMg01no511_i20.g1)
ACCAG584721AG584722
length737760
length of high quality
(start - end)		693 (45 - 737)540 (73 - 612)
definitionCHROMAT_FILE: MSMg01no511_i20.b1 PHD_FILE: MSMg01no511_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:27 2005CHROMAT_FILE: MSMg01no511_i20.g1 PHD_FILE: MSMg01no511_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:27 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGAAATTCTCCGACAAATGGATGGATCTGGATGATATGTTCCTAA
GTGACATAACTCAATCACAAAAGAAAGCACATGATATATACTCACTGATA
AGTGGATGTTATCCTTGAAGCTCAGAAAAAAACAAGGTAAAATTTGCAAA
ACCCATGAAACTCAACAAGAAGGAAGACCAAAGTGTGGATATGTCGTTCC
TTCTTAGAATTGGTAACAAAAGATCCATGGAAAGAGTTACAGAGAAAAAG
TTTGGAACTAAGACTGAAGGAATCCAGACACTGCTTCATTCTATGATCCA
TACCATAAACAACCACCAAACCCAGATTCTGTTGAAGAGCCAAACAAGAG
CTTAGGGACAGGAGACTGATATAGTTGTCTCCTGACACGATCTGCCATTT
CCTGACAAATACAGAAGTGGATGCTCACAGAAATCCATTGGACTGAGCAC
AGGGTCCCTAATTATGGAGCTAGAGAAAGTACACAAGGAACATTCTATGA
GGAAAAACAACTAACAAGTACTCCCAGAGTTCCCTGAGATTAAATCTCCA
ATCAAAGTAAACATAAGTTGTGACTTTTGCCTACAGCTGCATATGTAGCA
GAGGATGGACTAGTATGTCATCAATGGGAGGAGAGACACTTGTTCTTGTA
AAGTTCCTATGACCAAGTTTTGGGAATGCCTGGGCCN

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTATTTGAAACAAAGTGATAGGATCCA
TCTATCTCTTTCAAGGATATCTCCGTTTTGTTCAAAAAGAACAAAAATGC
AATGCAAGTTCAGGATATTGATCACCTATCCATGCATCTTAAACCCATAG
GTTCTAGCCAGAATGTAAGGTCAGAAGTCTAAACTTCACCTATACTACAA
CTAACTCTGAAGATATCTAGCAATCTCCAGTTCCTTTCTGGTACTTACCC
ACACCAAGTCTGCATTAAGGAATATAGTCTAGTGTGAGATAGTGCCAGCA
GTTAATTGCAAAATCCCACTCTGAGTTGAGTTGTATGTAAACTCAGACAT
CTGTAATATAGACACACATGCATATTCACAAATACTCACAGAAAGAGGCA
AGAAGTAGAGGAGCTGAATCTTAGAAATCCTCAAGGAAGAGAATGAAAAT
CTTGTAAGGCACAGAGGTAAGAGAAAAACTGTGTCTTTCTGCACAAAATC
AGGCCATTCTGTCTTCCATCACTGAACGGGAAGGCTCACTATCACTTATC
ACTATCTGATAAGGTATAGACAGTTGATGAAGGATGAATAGTCAGTTTTC
ATCAAAGGTATTGACTTTTGAAGTGATAGATTGTTCATTCTCTACTGGAA
GGCAGATGTCCCAGAGTTTATGGGAAAACAAATGAATTGTATGGGGTGTA
ACAAAGGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_i20.g1 MSMg01no511_i20.g1 CHROMAT_FILE:
MSMg01no511_i20.g1 PHD_FILE: MSMg01no511_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:27 2005
         (540 letters)



>mm_chrY_2432589_2433533
          Length = 945

 Score =  366 bits (189), Expect = e-105
 Identities = 377/451 (83%), Gaps = 27/451 (5%)
 Strand = Plus / Plus

                                                                       
Query: 58  gttcaaaaagaacaaaaatgcaatgcaag-ttcaggatattgatcacctatccatgcatc 116
           |||||| ||||| |||||| |||||| || |||||||| |||||| || |||| ||||||
Sbjct: 258 gttcaagaagaagaaaaattcaatgc-agtttcaggatcttgatc-cccatccctgcatc 315

                                                                       
Query: 117 ttaaacccataggttctagccagaatgtaaggtcagaagtctaaacttcacctatactac 176
           |||| |||||||| |  || ||||| || |||||||||||||||||||||||||||||||
Sbjct: 316 ttaatcccatagggtggagtcagaaggttaggtcagaagtctaaacttcacctatactac 375

                                                                       
Query: 177 aactaactctgaagatatctagcaatctccagttcctttctggtacttacccacaccaag 236
           ||| |||| ||||||| |||||| |||||| ||| || |||||||||||  |||||||||
Sbjct: 376 aaccaactgtgaagatttctagccatctcctgtttctgtctggtacttagtcacaccaag 435

                                                                       
Query: 237 tctgcattaaggaata-t---agtctagtgtgagatagtgccagcagttaattgcaaaat 292
           ||||| |||||| ||| |   |||||||||||||||||||||||||| | ||||||||| 
Sbjct: 436 tctgccttaaggcatactgcaagtctagtgtgagatagtgccagcagatgattgcaaaaa 495

                                                                       
Query: 293 cccactctgagttgagttgtatgtaaactcagacatctgtaatatagacacacatg--ca 350
           |||||| || ||||| ||||| ||||| | |||||||| ||||||||||||||| |  ||
Sbjct: 496 cccactatgtgttgacttgtacgtaaaatgagacatctataatatagacacacacgtaca 555

                                                                       
Query: 351 tattcacaaatactcacagaaagaggcaagaagtagaggagctgaatcttagaaatcctc 410
           ||  |||| ||||||||||||||||| ||||||| ||| |||||| |||||| || ||||
Sbjct: 556 ta--cacacatactcacagaaagaggtaagaagtggagaagctgagtcttaggaaccctc 613

                                                                       
Query: 411 aaggaagagaatga----aaatcttgtaaggcacagaggtaagagaaaaactgtgtcttt 466
           ||||||||||  ||    ||||||||||||||||||||||          |||||||| |
Sbjct: 614 aaggaagaga--gagtagaaatcttgtaaggcacagaggt----------ctgtgtctat 661

                                          
Query: 467 ctgcacaaaatcaggccattctgtcttccat 497
           |||||||||||| ||  |||||| |||||||
Sbjct: 662 ctgcacaaaatcgggttattctggcttccat 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 945
Length adjustment: 10
Effective length of query: 530
Effective length of database: 935
Effective search space:   495550
Effective search space used:   495550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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