BAC Information

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BAC

Clone NameMSMg01-537P09
ChromosomeY (Build37)
Map Location 1,266,153 - 1,266,838
singlet/doubletsinglet
Overlap genenone
Upstream geneJarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537P09.T7 (MSMg01no537_p09.b1)MSMg01-537P09.TJ (MSMg01no537_p09.g1)
ACCAG604806AG604807
length745753
length of high quality
(start - end)		688 (51 - 738)673 (81 - 753)
definitionCHROMAT_FILE: MSMg01no537_p09.b1 PHD_FILE: MSMg01no537_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:29 2005CHROMAT_FILE: MSMg01no537_p09.g1 PHD_FILE: MSMg01no537_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:29 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GGGGAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGTGGTTAAATTGTTTTGAAATGTCAGTCATGGGTCTTTG
ATGAAGGCTTTGGTCCACAGTACAATGTTCATAGGTAGTACAATATGCTC
TCTGAAAAGTGATTGGAACCTGAGGGCTTTAATCAATGAGTTAATCAATC
AATGGATGTGCATGGAATGGGTAAAAAACTTGTAAATGAACGTGGTCATT
TGGACAGGTCTTCAAAGCTGTTTATTGTCTTTGTCCCTTCTTGTGTTAAT
GCTGACTAGCTGCCAATAAGTTGAACAATTTTGCTGCTTCATGCCCCTTT
CATATTCATGTGATCATGGATCCTTCTTTCATTTGTGATAGTAACATGTC
AGGTTCAGAGGAAACATGGCTTAATTCTTTAATTTTTTTTTCTAGAAACG
GCATGCTAAGTGTAGAACCAATGTTACCTAGTTGTTGTAGTTGGAATATT
CAGCCACGGTATCTGTTGTCTTTGAGACTCAAGAACTTTGCTGCTACCCT
CACCACTGGTCTTTTTTCTGAATTCACTATTGTATTTTAGTAGATTTCAA
TATCATATGAAGTACCAGAAAAATGAGTGAAAAATGACAGTGGTGAGATG
TGTTTAGAATCATTAAATTACACACTTAAAAATAAATAAATCAATGGATT
TATATAGTACATAAATAAAACTCCAATAAAACTTCTGAAAAGGCT

NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCAAAAAATTGTATGAAG
TTCTCAAGGAATTAATTAATGTAGTTCTTAATATACAATGTCTTTACTGA
ACATATACAAACCACTTATATTTCAATCTCCTAAATAGCAACTCATTTTG
TAGCACTTACATTACATTAAGTGCAAAAGTAATCCAGAGATTATTTAAAA
TAAAGAAGGATCAGGGGATATGGCCCAGAGACAATGCCATGTGTGTGTTC
AAACATTCACCTACAACACCAGTGCTTATGATTTTGGGAGGGGCAGAGAT
AGGAAGATGACTGTGGCTTCCTGAAAGCCAGCTCAGCAAGAAACCCAGTC
ACAAGGGGATAAGTTATGTAGGAAAAGAGTAGATCACACTATACCCTTCC
CTAGCCTCTGAACTTACCTGTACAGTTCTCTATGCAGACTCACATAAATA
TGATTAAAATATGCAAGAGGTTATTTTGCATAGCTTATATTCAAAAGCAA
TGTTGTTTTAGACTAGAAACCTGAGGACTTTATATCATTATAGTTCCTGG
AGCAAACTCCCAAGATATAGATGATGGGTATATCTTCTTACTGTGCAAAG
GAAACCTCAGTTAAGTGTGTGTGTCAGTGAATCCAAACACCTTTCCTCCT
CTATGTTCCTTTATATAGCATAGAATGATCTGTAAATAATGAAAATATGA
AAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_p09.g1 MSMg01no537_p09.g1 CHROMAT_FILE:
MSMg01no537_p09.g1 PHD_FILE: MSMg01no537_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:29 2005
         (673 letters)



>mm_chrY_1265964_1267039
          Length = 1076

 Score =  609 bits (315), Expect = e-178
 Identities = 594/701 (84%), Gaps = 44/701 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcaaaa-a-attgtatgaagttctcaaggaattaattaatgtagttcttaatatacaa 58
           |||||||| | |||||||||| |||||||||||||||| || |||||||||||||||| |
Sbjct: 190 catcaaaatatattgtatgaaattctcaaggaattaatgaaagtagttcttaatatacca 249

                                                                       
Query: 59  tgtctttactgaacatatacaaaccacttatatt-tcaatctcctaaatagcaactc--a 115
           ||||| ||||||||||||||| |||||||||||| || |||||||||||| ||||||  |
Sbjct: 250 tgtctgtactgaacatatacagaccacttatattgtc-atctcctaaataacaactccta 308

                                                                       
Query: 116 ttttgtagcacttacattacattaagtgcaaaagtaatccagagattatttaaaataaag 175
              | ||||| || |||| ||||||| |||||||| |||||||||| |||||||||||||
Sbjct: 309 ---tatagcagtttcattgcattaagggcaaaagtcatccagagatcatttaaaataaag 365

                                                                       
Query: 176 aaggatcaggggatatggcccagag--acaatgcc-atgtgtgtgttcaaacattcacct 232
           ||||||||||  | ||||||||| |  | || ||| || ||| || ||| ||||||||||
Sbjct: 366 aaggatcaggcaagatggcccaggggta-aa-gccaat-tgtttggtcagacattcacct 422

                                                                       
Query: 233 acaacaccagtgcttatgattttgggaggggcagagataggaagatgactgtggcttcct 292
           | |||| ||||||| | ||  | |||||||||||||| || |||| ||||||||||||||
Sbjct: 423 ataacaacagtgctcagga--tggggaggggcagagacagaaagaagactgtggcttcct 480

                                                                       
Query: 293 gaaagccagc------------tcagcaagaaacccagtcacaaggggataagttatgta 340
           |||||| |||            |||||||||||||| |||| ||||| | || ||| |  
Sbjct: 481 gaaagcaagcctcactcctaggtcagcaagaaaccctgtcataagggaacaaatta-g-- 537

                                                                       
Query: 341 gga---aaagagtagatcacactatacccttccctagcctctgaacttacctgtacagtt 397
           |||   || ||| ||| |||||| |||| |||||| ||||||||| |||||||||||| |
Sbjct: 538 ggagtgaaggagcagaacacactgtacctttccctggcctctgaatttacctgtacaggt 597

                                                                       
Query: 398 ctctatgcagactcacataaatatgattaaaatatgcaagaggttattttgcatagctta 457
           || |||||| || |||||||||||||||||| ||| |||||||||| ||||||||| |||
Sbjct: 598 ctgtatgcacacacacataaatatgattaaagtatacaagaggttactttgcatagatta 657

                                                                       
Query: 458 tat-tcaaaagcaatgttgttttagactagaaacctgaggac-tttatatcattatagtt 515
           ||| | ||||||||||||||||||| ||||| |||||||||| ||||||||||||  | |
Sbjct: 658 tatgt-aaaagcaatgttgttttagcctagagacctgaggacttttatatcattaggggt 716

                                                                       
Query: 516 cctggagcaaactcccaagatatagatg---atgggtatatcttcttactgtgcaaagga 572
           |||||||||||||||| | ||||||| |   |||||||||||||||||||||||||||||
Sbjct: 717 cctggagcaaactccccatatataga-gagaatgggtatatcttcttactgtgcaaagga 775

                                                                       
Query: 573 aacctcagttaagtgtgtgtgtcagtgaatccaaacacctttcctcctctatgttcct-t 631
           |||||||||||||||||||||||||||| |||||||| |||||||||||||  ||||| |
Sbjct: 776 aacctcagttaagtgtgtgtgtcagtgactccaaacagctttcctcctctaaattcctat 835

                                                    
Query: 632 tatatagcatagaatgatctgtaaataatgaaaatatgaaa 672
           | ||||||| ||||||||||||||||||||||| |||||||
Sbjct: 836 t-tatagcacagaatgatctgtaaataatgaaactatgaaa 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1076
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1066
Effective search space:   706758
Effective search space used:   706758
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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