BAC Information

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BAC

Clone NameB6Ng01-001A13
Chromosome3 (Build37)
Map Location 41,059,147 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001A13.b
ACCDH839466
length878
definitionDH839466|Mus musculus domesticus DNA, BAC clone: B6Ng01-001A13, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgagccccatcttttaagggggctatttgatt
ttctggagtccaccctcttgagttctttatatatattggatataagtacc
ctatctgatttaagataggtaaagatcctttcccaatctgttggtggtct
ttttgtattattgaaggtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaatcctcgatcttaaagcacaagccattgctgtt
ctattcaggaattttttccctgtgcccatatcttcaagacttttccccac
tttctcctctataagtttcagtgtctctgtttttatgtggagttccttga
tccacttagatttgacctaagtacaaggagagaggaatgggtcaatttgc
attcttctacatgataacaaccagttgtgacagcaccatttgttgaaaat
gctgtcttttttccactggaccgttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaatactattccattgg
tctacttgtctgtcactataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggtacttt
tatccttgagaagagcttttgcaatcctaggttttttgttattccagatg
aatttgcagattgaactttctaattcgttgaagaattgagttggaatttt
gatcgggattgcattgaatctgtagattgcttttggcaagatagcccatt
tctacactgttgatcctgccaataaatgagcatgggagatcttttcatct
tctgagatcttctttaatttctttcttc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059147_41059737
seq2: B6Ng01-001A13.b_46_637 (reverse)

seq1  TGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATGG  50
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGTAGACCAATGG  50

seq1  AATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGAT  100
      ||||| ||||||||  |||||| ||| |||||||||||||||||||||||
seq2  AATAGTATTGAAGATCCAGAAATGAACCCACACACCTATGGTCACTTGAT  100

seq1  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCA  150
      ||| |||||||||||||||||  |||||||||||||||||||||||||||
seq2  CTTTGACAAGGGAGCTAAAACGGTCCAGTGGAAAAAAGACAGCATTTTCA  150

seq1  ACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATT  200
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  ACAAATGGTGCTGTCACAACTGGTTGTTATCATGTAGAAGAATGCAAATT  200

seq1  GATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGA  250
      || ||| |||| |||||||||||| |||||||||||||||||||||||||
seq2  GACCCATTCCTCTCTCCTTGTACTTAGGTCAAATCTAAGTGGATCAAGGA  250

seq1  ACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  300
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACTCCACATAAAAACAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  300

seq1  AAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCA  350
      |||| ||||||||||||| ||||||| ||||||||||| |||||||||||
seq2  AAAGTCTTGAAGATATGGGCACAGGGAAAAAATTCCTGAATAGAACAGCA  350

seq1  ATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACT  400
      |||||||||||| |||||| ||| || |||||||||||||||||||||||
seq2  ATGGCTTGTGCTTTAAGATCGAGGATTGACAAATGGGACCTCATGAAACT  400

seq1  GCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG-GCAC  449
      |||||||||||||||||||||||||||| ||||||| ||||||||  |||
seq2  GCAAAGCTTCTGCAAGGCAAAAGACACCTTCAATAATACAAAAAGACCAC  450

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  499
      |||||||||||||||||||||||||||||| |||||||||||||| ||| 
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCTTAAATCAGATAGGGTACTT  500

seq1  ATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAA  549
      ||||||||||||||| |||||||||||| |||||| ||||||||||||||
seq2  ATATCCAATATATATAAAGAACTCAAGAGGGTGGACTCCAGAAAATCAAA  550

seq1  TAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  591
      || |||| |||||| |||||||||||||||||||||||||||
seq2  TAGCCCCCTTAAAAGATGGGGCTCAGAGCTAAACAAAGAATT  592