BAC Information

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BAC

Clone NameB6Ng01-001D01
Chromosome3 (Build37)
Map Location 36,401,609 - 36,497,088
singlet/doubletdoublet
Overlap geneLOC665709, Exosc9, Ccna2, Bbs7
Upstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik
Downstream geneTrpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001D01.bB6Ng01-001D01.g
ACCDH839582DH839583
length1,171724
definitionDH839582|Mus musculus domesticus DNA, BAC clone: B6Ng01-001D01, 5' end.DH839583|Mus musculus domesticus DNA, BAC clone: B6Ng01-001D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,495,900 - 36,497,088)(36,401,609 - 36,402,332)
sequence
gaattcaggacctctgctcgctctagccctgcttgctccggcccaaagat
ttatttattattatatctaagtacactgtagctgtcttcagacactccag
aagagggtgtcagatcttgttacagatggttgtgagccaccatgtggttg
ctgggatttgaactcaggaccttcagaagagcagtcagtgctcttaaccg
ctgagccatctctccagccctaaggtaatgtttttttctttgctgtttgt
ctcaacatttgcacttgtttcttcttgataatcgtaggaccacatgcttt
attttattggtaggaatgatacgtctataaaagtcaacttgagaaaatta
gccataagtactgattaatattttgagtttgaaatataccctccctatgc
attattctttctgttgttgttttgtgggacatggtctcacatagcccacg
gtgttttctaactcattctgtagctgaggatgcccttgaactcctggccc
tttttgctaggtgctagatcccaggtatgctgtaccgcacccacctaggg
cattagtctgtcctacggatccagaatcacattgttttcatttgcttagc
tggaggtagttacagtgtttgcttctgttttcccgaagcattacaaataa
acgaacagaagtgacagagttcttctttaaccctaatgttgacatcctgt
gaacccttctgatctgtaaagttctcttgctggtcctgaatagtgctgat
tcccttcagttctgagattgctttcacggcccactcaactcaataagtct
tgagaaaagttaaccccatgctcacatacaataaggaaatggaagatgat
aaaacttttattgaccctgtagcccttgctaacttgttagggaagtaaga
ctcacctttttgggcatagttaaaggctacaagaacttttaaggcagaga
tgccacaattaccattagcatgttcttatttgtaagaccaccaggaaatc
attatacaaactaatatgccagattcatcaggtatcctactttctgtaat
aggaaatagaaatgctcagcagaaaaagcactgcaggaaacataaagttc
agagttcagatcccagacattgagagctggcaggtatggtggtgatctgc
ctagtttgtgtcacctttacc
gaattcacttttcaatgattaagcagcaagctagttctaaagcttaaaaa
gtcagagaaccctagagctcacagttacgtttatttgtttatggcctatt
tgtatgtgcggtttgtgtagttatagcaatggtaaacataaaattttatg
gaaggacttctagcataatatattagaatattgtcttgtcgctacacggg
cttcttatgctttacttttgttattttttaaattcgcaactttgaaattt
ttttgtttttagagaaattaatttgtatgtatgggtgttttccctgaata
tatgtttatgcagtttgtgtacctggtgccctagaaggccagagaggaca
tcagagtccctggaattggagttacagatggttgtaaaccaccatagggc
tgctgtgaattgagcctgggaccgatggaagagcagccagtgttctcggc
tgctgagccacctaatcaacttgttacatttcgcttttaagtaactacat
gctatcacattgagtaactactttgtattgaatcatcctgcagccaccag
attgagtttgttgtcaaatatttactgaaagtttctatagtgactttttt
tttttttaacagtagcacagatgttttgaaaacaatttttagcatcagac
tattttcacacattttaaaactgtggtcaggctaatattctcacgggttt
ggtggatgtagggttgtttgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_36495900_36497088
seq2: B6Ng01-001D01.b_48_1218 (reverse)

seq1  GGTAAAGTTGACACAAAACTAGCCAGTACAACCACCATACCTGCCCAGCT  50
      ||||||| |||||| ||||||| ||| |  ||||||||||||| ||||||
seq2  GGTAAAGGTGACAC-AAACTAGGCAG-ATCACCACCATACCTG-CCAGCT  47

seq1  CTTTCCATTGGTTCTGGGGATCTGAACTCTGGACTTTATGGTTTCCTGGC  100
      ||   || ||  ||| ||||||||||||||| ||||||| ||||||||  
seq2  CT---CAATG--TCT-GGGATCTGAACTCTGAACTTTAT-GTTTCCTG--  88

seq1  AAGTGCTTTTTCTGCTGAGCCATTTTCCTATTTCCTATTACAGAAAGTAG  150
       |||||||||||||||||| |||||  |||||||||||||||||||||||
seq2  CAGTGCTTTTTCTGCTGAG-CATTT--CTATTTCCTATTACAGAAAGTAG  135

seq1  GATACCCTGAATGAATCTGGCATATTAGTTTGTATAATGATTTCCTGGTG  200
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATA-CCTG-ATGAATCTGGCATATTAGTTTGTATAATGATTTCCTGGTG  183

seq1  GTCTTTACAAATAAGAACATGCTAATGGTAATTGTGGCATCTCTTGCCTT  250
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTC-TTACAAATAAGAACATGCTAATGGTAATTGTGGCATCTC-TGCCTT  231

seq1  AAAAGTTCTTGTAGCCTTTAACTATG-CCAAAAAGGTGAGTCTTACTTCC  299
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAAGTTCTTGTAGCCTTTAACTATGCCCAAAAAGGTGAGTCTTACTTCC  281

seq1  CTAACAAGTTAGCAAGGGCTACAGGGTCAATAAAAGTTTTATCATCTTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAGTTAGCAAGGGCTACAGGGTCAATAAAAGTTTTATCATCTTCC  331

seq1  ATTTCCTTATTGTATGTGAGCATGGGGTTAACTTTTCTCAAGACTTATTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTATTGTATGTGAGCATGGGGTTAACTTTTCTCAAGACTTATTG  381

seq1  AGTTGAGTGGGCCGTGAAAGCAATCTCAGAACTGAAGGGAATCAGCACTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGTGGGCCGTGAAAGCAATCTCAGAACTGAAGGGAATCAGCACTA  431

seq1  TTCAGGACCAGCAAGAGAACTTTACAGATCAGAAGGGTTCACAGGATGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGACCAGCAAGAGAACTTTACAGATCAGAAGGGTTCACAGGATGTC  481

seq1  AACATTAGGGTTAAAGAAGAACTCTGTCACTTCTGTTCGTTTATTTGTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAGGGTTAAAGAAGAACTCTGTCACTTCTGTTCGTTTATTTGTAA  531

seq1  TGCTTCGGGAAAACAGAAGCAAACACTGTAACTACCTCCAGCTAAGCAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCGGGAAAACAGAAGCAAACACTGTAACTACCTCCAGCTAAGCAAA  581

seq1  TGAAAACAATGTGATTCTGGATCCGTAGGACAGACTAATGCCCTAGGTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAATGTGATTCTGGATCCGTAGGACAGACTAATGCCCTAGGTGG  631

seq1  GTGCGGTACAGCATACCTGGGATCTAGCACCTAGCAAAAAGGGCCAGGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGGTACAGCATACCTGGGATCTAGCACCTAGCAAAAAGGGCCAGGAG  681

seq1  TTCAAGGGCATCCTCAGCTACAGAATGAGTTAGAAAACACCGTGGGCTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGGCATCCTCAGCTACAGAATGAGTTAGAAAACACCGTGGGCTAT  731

seq1  GTGAGACCATGTCCCACAAAACAACAACAGAAAGAATAATGCATAGGGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACCATGTCCCACAAAACAACAACAGAAAGAATAATGCATAGGGAG  781

seq1  GGTATATTTCAAACTCAAAATATTAATCAGTACTTATGGCTAATTTTCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATTTCAAACTCAAAATATTAATCAGTACTTATGGCTAATTTTCTC  831

seq1  AAGTTGACTTTTATAGACGTATCATTCCTACCAATAAAATAAAGCATGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGACTTTTATAGACGTATCATTCCTACCAATAAAATAAAGCATGTG  881

seq1  GTCCTACGATTATCAAGAAGAAACAAGTGCAAATGTTGAGACAAACAGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTACGATTATCAAGAAGAAACAAGTGCAAATGTTGAGACAAACAGCA  931

seq1  AAGAAAAAAACATTACCTTAGGGCTGGAGAGATGGCTCAGCGGTTAAGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAACATTACCTTAGGGCTGGAGAGATGGCTCAGCGGTTAAGAG  981

seq1  CACTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATG  1031

seq1  GTGGCTCACAACCATCTGTAACAAGATCTGACACCCTCTTCTGGAGTGTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCACAACCATCTGTAACAAGATCTGACACCCTCTTCTGGAGTGTC  1081

seq1  TGAAGACAGCTACAGTGTACTTAGATATAATAATAAATAAATCTTTGGGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGCTACAGTGTACTTAGATATAATAATAAATAAATCTTTGGGC  1131

seq1  CGGAGCAAGCAGGGCTAGAGCGAGCAGAGGTCCTGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCAAGCAGGGCTAGAGCGAGCAGAGGTCCTGAATTC  1171

seq1: chr3_36401609_36402332
seq2: B6Ng01-001D01.g_67_790

seq1  GAATTCACTTTTCAATGATTAAGCAGCAAGCTAGTTCTAAAGCTTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTCAATGATTAAGCAGCAAGCTAGTTCTAAAGCTTAAAAA  50

seq1  GTCAGAGAACCCTAGAGCTCACAGTTACGTTTATTTGTTTATGGCCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAACCCTAGAGCTCACAGTTACGTTTATTTGTTTATGGCCTATT  100

seq1  TGTATGTGCGGTTTGTGTAGTTATAGCAATGGTAAACATAAAATTTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGCGGTTTGTGTAGTTATAGCAATGGTAAACATAAAATTTTATG  150

seq1  GAAGGACTTCTAGCATAATATATTAGAATATTGTCTTGTCGCTACACGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACTTCTAGCATAATATATTAGAATATTGTCTTGTCGCTACACGGG  200

seq1  CTTCTTATGCTTTACTTTTGTTATTTTTTAAATTCGCAACTTTGAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTATGCTTTACTTTTGTTATTTTTTAAATTCGCAACTTTGAAATTT  250

seq1  TTTTGTTTTTAGAGAAATTAATTTGTATGTATGGGTGTTTTCCCTGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTAGAGAAATTAATTTGTATGTATGGGTGTTTTCCCTGAATA  300

seq1  TATGTTTATGCAGTTTGTGTACCTGGTGCCCTAGAAGGCCAGAGAGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTATGCAGTTTGTGTACCTGGTGCCCTAGAAGGCCAGAGAGGACA  350

seq1  TCAGAGTCCCTGGAATTGGAGTTACAGATGGTTGTAAACCACCATAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTCCCTGGAATTGGAGTTACAGATGGTTGTAAACCACCATAGGGC  400

seq1  TGCTGTGAATTGAGCCTGGGACCGATGGAAGAGCAGCCAGTGTTCTCGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGAATTGAGCCTGGGACCGATGGAAGAGCAGCCAGTGTTCTCGGC  450

seq1  TGCTGAGCCACCTAATCAACTTGTTACATTTCGCTTTTAAGTAACTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCCACCTAATCAACTTGTTACATTTCGCTTTTAAGTAACTACAT  500

seq1  GCTATCACATTGAGTAACTACTTTGTATTGAATCATCCTGCAGCCACCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCACATTGAGTAACTACTTTGTATTGAATCATCCTGCAGCCACCAG  550

seq1  ATTGAGTTTGTTGTCAAATATTTACTGAAAGTTTCTATAGTGACTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTTTGTTGTCAAATATTTACTGAAAGTTTCTATAGTGACTTTTTT  600

seq1  TTTTTTTAACAGTAGCACAGATGTTTTGAAAACAATTTTTAGCATCAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAACAGTAGCACAGATGTTTTGAAAACAATTTTTAGCATCAGAC  650

seq1  TATTTTCACACATTTTAAAACTGTGGTCAGGCTAATATTCTCACGGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCACACATTTTAAAACTGTGGTCAGGCTAATATTCTCACGGGTTT  700

seq1  GGTGGATGTAGGGTTGTTTGTTTG  724
      ||||||||||||||||||||||||
seq2  GGTGGATGTAGGGTTGTTTGTTTG  724